RNA id: TU73888


Basic Information

Item Value
RNA id TU73888
length 757
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G64918
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6093689 ~ 6096480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACCTGCTAGAAAGAGACTTCTGACCCCTGGATCTCTGATGATGGGCATTTGGGTAAGGCGAGTGTTTCCACAAGCAATAAGAGACTCTGAAAGCAAGCAGCCTGCTGGAAGAGACTCCATATGAACAGAGGTGCGGAAGACTGGATGGCCAATATCTCGATCCACCGGTCGCCCACTGGGGGCTGGCAGTGGCCTTCCAGCAGGCAGGATCACAGATCTTCTTGTAGGAAGAGCAAATGCCGGTTCTGCTCGTGGTGCAGCCAGTTTAAATGTGGGTGGCATTACTCGTCTTTCAATTGCTACAGGGCGAACAGCAGATCTAAACACTGAAAAACTGCTGTTATCATCGTCATCATCATCGCTGTCACTGTCGTCCTCTAGATAGTCGTCATCATCGTGGTCATCATTATCAAAATGGATTGGTCTCATAAACTGAGGTCCTGTGGGTATTACAGGGGCCTTAGGTGATTTTCCAGGATCCAGACTCACCTCCTGGTTTTTCTTTACTTGCTTCTTAGGGACATTTGAGGGAGGTTCTTTTGCTGGGGTGATCACCATTTTGTCCTTTTTTGGCTTCACCTCCAGAACCTCCTTCCCCACAGGTGGTTTTCCATTTCCTGTCAGTCTGTTTTTCAAGCTTGTTTTCCCCACAGATGTTGGATTGGTTTTACTGGCCACAGACTTCAGGGTGGGTGAAGCTAGACATGGTGGGGCAAACAAAAATTCAGTACCCACCACCAAGCATCCCACTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73745 lncRNA downstream 19767 6074699 ~ 6075674 (-) True G64794
TU73885 lncRNA downstream 33360 6061846 ~ 6062081 (-) True G64916
TU73880 lncRNA downstream 37298 6032036 ~ 6058143 (-) True G64911
TU73879 lncRNA downstream 65732 6028999 ~ 6029709 (-) True G64910
TU73848 lncRNA downstream 175812 5919243 ~ 5919629 (-) True G64879
TU73781 lncRNA upstream 56692 6153172 ~ 6153751 (-) True G64819
TU73757 lncRNA upstream 70256 6166736 ~ 6181828 (-) False G64795
TU73756 lncRNA upstream 75468 6171948 ~ 6173169 (-) True G64795
TU73903 lncRNA upstream 85721 6182201 ~ 6182443 (-) True G64932
TU73905 lncRNA upstream 87922 6184402 ~ 6184611 (-) True G64934
CI01000010_06083696_06089271.mRNA mRNA downstream 5867 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_05921406_05962819.mRNA mRNA downstream 132622 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_05743309_05757933.mRNA mRNA downstream 337508 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05734012_05743267.mRNA mRNA downstream 351942 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_05672032_05717224.mRNA mRNA downstream 377785 5670007 ~ 5717656 (-) True CI01000010_05672032_05717224
CI01000010_06107283_06108881.mRNA mRNA upstream 9099 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06180084_06216445.mRNA mRNA upstream 83604 6180084 ~ 6216445 (-) True CI01000010_06180084_06216445
CI01000010_06253230_06263855.mRNA mRNA upstream 155886 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06456276_06481282.mRNA mRNA upstream 359796 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06504062_06505040.mRNA mRNA upstream 407503 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
TU73846 other downstream 178430 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 852515 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1481885 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1859025 4229950 ~ 4236416 (-) False G64237
TU72971 other downstream 2195530 3899741 ~ 3899911 (-) True G64080
TU74496 other upstream 1567211 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1746156 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2545210 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5832481 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5868385 11968202 ~ 11968254 (-) True G67957

Expression Profile