RNA id: CI01000010_05743309_05757933.mRNA


Basic Information

Item Value
RNA id CI01000010_05743309_05757933.mRNA
length 279
RNA type mRNA
GC content 0.53
exon number 2
gene id CI01000010_05743309_05757933
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5743309 ~ 5757933 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTCGCTTCGGAGACGATGTTCCCGGTCTGCTGGGAGCCGGGGATGGGGGTTCGGAGCGCAGTCGGAACCGGGATGCTCCCGCGGTATCCACAGGTGGAGTTTCACCAGCCTTCAAACAAACCAAAGCGCAGCGAGCCCGAACTATGGCCCTGTACAACCCCATCCCAGTTCGACAGAACTGCTTCACCGTCAACAGATCGCTTTTTATCTTTGGAGAGGACAACGTCGTTAGGAAGTATGCTAAGAAGATTATAGAATGGCCATATCCTTTTTAT

Function

GO: NA

KEGG:

id description
K04852 CACNA1E, CAV2.3; voltage-dependent calcium channel R type alpha-1E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73668 lncRNA downstream 151454 5591481 ~ 5591855 (-) True G64721
TU73696 lncRNA downstream 238327 5501157 ~ 5504982 (-) True G64746
TU73680 lncRNA downstream 257880 5485179 ~ 5485429 (-) True G64733
TU73655 lncRNA downstream 270313 5472768 ~ 5472996 (-) True G64712
TU73653 lncRNA downstream 272636 5470404 ~ 5470673 (-) True G64710
TU73780 lncRNA upstream 69645 5827578 ~ 5881023 (-) True G64818
TU73806 lncRNA upstream 76081 5834014 ~ 5836359 (-) True G64837
TU73836 lncRNA upstream 131012 5888945 ~ 5889757 (-) True G64867
TU73848 lncRNA upstream 161310 5919243 ~ 5919629 (-) True G64879
TU73879 lncRNA upstream 271066 6028999 ~ 6029709 (-) True G64910
CI01000010_05672032_05717224.mRNA mRNA downstream 25653 5670007 ~ 5717656 (-) True CI01000010_05672032_05717224
CI01000010_05636005_05648665.mRNA mRNA downstream 94644 5635906 ~ 5648665 (-) True CI01000010_05636005_05648665
CI01000010_05627867_05634808.mRNA mRNA downstream 108501 5626570 ~ 5634808 (-) True CI01000010_05627867_05634808
CI01000010_05594817_05606739.mRNA mRNA downstream 136570 5593631 ~ 5606739 (-) True CI01000010_05594817_05606739
CI01000010_05538251_05562058.mRNA mRNA downstream 181251 5537781 ~ 5562058 (-) True CI01000010_05538251_05562058
CI01000010_05921406_05962819.mRNA mRNA upstream 163191 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_06083696_06089271.mRNA mRNA upstream 325610 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_06107283_06108881.mRNA mRNA upstream 347646 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06180084_06216445.mRNA mRNA upstream 422151 6180084 ~ 6216445 (-) True CI01000010_06180084_06216445
CI01000010_06253230_06263855.mRNA mRNA upstream 494433 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
TU73495 other downstream 500383 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1129753 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1506893 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 1843398 3899741 ~ 3899911 (-) False G64080
TU73846 other upstream 158324 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 335756 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 1905758 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 2084703 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2883757 8641690 ~ 8674897 (-) True G67099

Expression Profile