RNA id: CI01000010_05627867_05634808.mRNA


Basic Information

Item Value
RNA id CI01000010_05627867_05634808.mRNA
length 2733
RNA type mRNA
GC content 0.40
exon number 14
gene id CI01000010_05627867_05634808
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5626570 ~ 5634808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACAGTGGAAGTGGAGCACATTATCAGCACAAAACTACAGCTCAAGAAGAAAGCTGAGCATTTGAAGGCAGACCTGATGAGGCAGTTTGACACTCAAGTGAATGAGTTCATGGACAGCCTGATAGAGGAGTCTGCCAGTCTGGGTTCATCCCATGTGAGCACAGTCTTTCAGTCTCTCTCAGATAAGGAGAAAAGCAAACTCAGGCATACGCAACCTTCCCAAGTCCAAAGCAAGCAGTTTGTGATTCGTCGATCCCTGTTAGATGATCTGTTTGAGGTGAACCACATCCGCACCATCTATCACATGTTCATCGCCCTCCTCATCCTCTTCATCTTCAGCACGCTCGTCGTGGACTTCATCGATGAGGGCAGTGTCTGGGCCAGCGTCTACCCCACGTCAAACTATCGGGCCTTATGGACAGTGCTGGCCGGTTCTCTCTTGCTGCTGTACCAGGGGCTGTGTTTGGGTTTCCTACCTACATATGTGGTGCTGAAGAATGGCCTTCCCCCTGCTTCATGCTTCATACTTATTCTAGAACAGGTGCGGCTGATGATGAAGGCTCACTCTTTCATCAGGGAAAATGTGCCAAGAGTACGATCCTTAGAACGAAACAAAACAAATTCTGTTGCTGTACCTCAGTTTACCCAGTACATTTACTTTCTCTTTGCACCCACTCTAATATACAGAGACAATTATCCACGAAATCCTTGTATTCGGTGGGGTTATGTGGCTACAAAGTTTTTGCAGGTGCTGGGGTGTTTGTTTTATGCGTATTACATATTTGTGCGGCTGTGTATCCCTCAGTTTCGCAGTATCAGTATGCAGCTCTTTGACCTGAGGGCCATGGTGTTGTGTGTCTTCAACTCTATACTGCCAGGAGTGCTGGTGCTTTTCTTGGCGTTCTTTGCCTTTCTGCATTGCTGGCTTAACGCATTTGCTGAAATGCTACGATTTGGAGACAGAATGTTTTATAAGGACTGGTGGAACTCCACTTCATTTGCTAACTATTACCGCACATGGAATGTTGTAGTTCATGACTGGCTTTATTATTATGTCTACAGGGACTTCCTGTGGATGACACAGAAGCGATTCCGTGCGGCGGCCATGTTAGTTGTTTTTACCGTGTCTGCTGTTGTGCACGAGTATGTTCTGGCCATCTGCTTTGGCTTCTTCTATCCCGTCCTGTTCTGCCTCTTCATGTGCTTCGGAATGGCGTTTAACTTCGTTCTTCATGACCGAAGAAAAGGGCCGATCTGGAATGTGATCATGTGGACTGCGCTGTTCTTGGGACAGGGGGTTCTCATCTGCTTGTACTCTCAGGAGTGGTACGCTCGGCGCTACTGCTCCATTGAAGAGCCCTCTTTCATAGACTTGCTGAAGCCTCGATCTTGGACTTGTTATCCACAGACTAAAACTGCTGTGTTCGCTCACTAAGCCACACCTCCAGCTGCCAGATGAATGTGATTCATACTGGATGAAGGGAGCACAACTTATTTTGGAACTTTTTTAGCATTCTGTAGGTATTGCACTATGACCAAACAAAGTGAAAAGTGACAATCTTATTTTATAATCATGATGACAATGTTTTACAAAGAGGCCTTGGATATTTTATTTGTTGAGATCATAATATTTATGATAACATCTGTAACAGAATGTAGAATATCTATAATGTGCAAAATCAAATTTATAAGCGACAGTTTAGTTAGTGTTTGACAATCTATTTTAGGTTATGTCTGATCTGGCTAAAGAGATTCTATTTTTAGAAGGCTTTGTGATGTCATAAAGTTGATATCAGATCATAAATGTGTTTTGTGTACTGCCACTTCTTAGATAGTGTTTGATTATTGTGGTGTTATTCCAGTACTTGAAGAGTATAGATGTGGCACATTTGTACCAGTTTTGCCTGGACCTCACAAAATTCTAGAATGTTTACAAGCGGGGTTGTGAATTCTAAAACCCAAGTGGATTTATTTTATGTGCCATACTGCTGTGAAACACCATTGTTTACTTCTTACCTTTCATTCCTAGAGTTTTAATTAAAATGACTAAAATTAAAATGGGGAAGTTCTCCATTCTGCCAATTTTATTTACTTTAGTTACTGTTTTTAAGAGTTAGACTGGTAGCCTGGACTAAGAGTTCTGGATATTTAGACTTTTTTTGTTCCTAAAGCTGAACTAATTGGATACTAATTTAAAAGCCATGATTTAGAAATTATTTTTTTATCACAAGATAGGGTATCATCAGATGTTTGGAAGTGTTGAGGTGTTGCAGCTGGCTGCATGTGATCTTTGTGTTATTACATGGTTTTCAAGCACAATCCCTTTATTAGTTATGAATTATTGTTAGGTACACTACCAGGATTTATTTTAAAAACTACGACATTTTGAATGTCATTTATCAGTGCAAAAAAATTAAGTATATTTATAAAAAAAAGTACCTGCAATAACTGTGATGACCAGCAGGTGGTGGTGGAGAGTTAAATGTTAGGACTACTGTGTGTCTGTACAAGCAAGGCATTTAGATTTTTTTTTTTTTTCGACACCTGTTATGTAAATGATTTGTAATTTCCAGAATAGTCGATGACTGTAATTTTCATGACAAAAAACGTGATCAATGTTTTGGAATAATTAAAACAGATGCCATATTTTTAAACTAATTTTCATCATAATTTATTTTGTGAAATGTCCAGTTCGTAGGCTGTCCCAGCATGATCTGTAATGGACAAATAAA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73668 lncRNA downstream 34715 5591481 ~ 5591855 (-) True G64721
TU73696 lncRNA downstream 121588 5501157 ~ 5504982 (-) True G64746
TU73680 lncRNA downstream 141141 5485179 ~ 5485429 (-) True G64733
TU73655 lncRNA downstream 153574 5472768 ~ 5472996 (-) True G64712
TU73653 lncRNA downstream 155897 5470404 ~ 5470673 (-) True G64710
TU73780 lncRNA upstream 192770 5827578 ~ 5881023 (-) True G64818
TU73806 lncRNA upstream 199206 5834014 ~ 5836359 (-) True G64837
TU73836 lncRNA upstream 254137 5888945 ~ 5889757 (-) True G64867
TU73848 lncRNA upstream 284435 5919243 ~ 5919629 (-) True G64879
TU73879 lncRNA upstream 394191 6028999 ~ 6029709 (-) True G64910
CI01000010_05594817_05606739.mRNA mRNA downstream 19831 5593631 ~ 5606739 (-) True CI01000010_05594817_05606739
CI01000010_05538251_05562058.mRNA mRNA downstream 64512 5537781 ~ 5562058 (-) True CI01000010_05538251_05562058
CI01000010_05516002_05519888.mRNA mRNA downstream 106652 5515967 ~ 5519918 (-) True CI01000010_05516002_05519888
CI01000010_05508908_05511594.mRNA mRNA downstream 114866 5508779 ~ 5511704 (-) True CI01000010_05508908_05511594
CI01000010_05451275_05454147.mRNA mRNA downstream 171791 5450966 ~ 5454779 (-) True CI01000010_05451275_05454147
CI01000010_05636005_05648665.mRNA mRNA upstream 1098 5635906 ~ 5648665 (-) True CI01000010_05636005_05648665
CI01000010_05672032_05717224.mRNA mRNA upstream 35199 5670007 ~ 5717656 (-) True CI01000010_05672032_05717224
CI01000010_05734012_05743267.mRNA mRNA upstream 98989 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_05743309_05757933.mRNA mRNA upstream 108501 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05921406_05962819.mRNA mRNA upstream 286316 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
TU73495 other downstream 383644 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1013014 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1390154 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 1726659 3899741 ~ 3899911 (-) False G64080
TU73846 other upstream 281449 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 458881 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 2028883 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 2207828 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 3006882 8641690 ~ 8674897 (-) True G67099

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069663 True 1665 mRNA 0.48 15 NC_007119.7 14890821 ~ 14909870 (+)