RNA id: TU73836


Basic Information

Item Value
RNA id TU73836
length 813
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G64867
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5888945 ~ 5889757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCTTCCCCGACCACTCCTCACCCCAGACACACTTAAACGCAACACATGATCTATTCATTGAGATAAACGCACACGGCACTGAGGACACTGATAGGGTGAATAATGCTCAGGCTTTGGAAAGGCTATGATGACAAAAGAGTCATGGTGTCTCATGAATGGTTACTGTCACACAGTCAAGTTTACAGTGTTTGAGAAATGAGTAAAATCATCAGGAACAGTCTGGAAGGCTGGAATACACTACAAGAAAACTTAAAGGGGTCATATAATGCCACTTTTACAAGATGTAAAATAAGTCTCTGATGTCCCCAGAGTGTGTATGTGAAGTTTTAGCTCAAAATACCCCACAGATCATTTTTATAGCATGTTAAATTTGTCACTTTTTGAGGGTGAGCAAAAACGCTCTGTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCTCAAGAAGAGGGCGGAGTTTCAAGAGCTTGTGTTAGCAGCGCCGATTACCTCATGCAGACTCACTAAAAATGTCAGAAACTGTTTCAAACCGAAGTTGGATAATTACAGAGAGACTCAAGAAAAAGTGACAACATGTAGAATGCAATAGGATTTATGTAGCTGAAGTGGAGTTAACTATCTTAACGTCATTAATTAGCATATTTTGTCATGATAAGCTATAAATCGCTTGTGTGGGAACTGTTATAAGTTCCTACAGAGCCAGAGAATATTTGCTGCTTGAAGATAGAACAGGTATAGCGTTAGTTTAATTACGGTTATTACTTATATCATCTTGCTTTTATGACATGCTATTGCATTTGTGTTACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73780 lncRNA downstream 7922 5827578 ~ 5881023 (-) True G64818
TU73806 lncRNA downstream 52586 5834014 ~ 5836359 (-) True G64837
TU73668 lncRNA downstream 297090 5591481 ~ 5591855 (-) True G64721
TU73696 lncRNA downstream 383963 5501157 ~ 5504982 (-) True G64746
TU73680 lncRNA downstream 403516 5485179 ~ 5485429 (-) True G64733
TU73848 lncRNA upstream 29486 5919243 ~ 5919629 (-) True G64879
TU73879 lncRNA upstream 139242 6028999 ~ 6029709 (-) True G64910
TU73880 lncRNA upstream 142279 6032036 ~ 6058143 (-) True G64911
TU73885 lncRNA upstream 172089 6061846 ~ 6062081 (-) True G64916
TU73745 lncRNA upstream 184942 6074699 ~ 6075674 (-) True G64794
CI01000010_05743309_05757933.mRNA mRNA downstream 131012 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05734012_05743267.mRNA mRNA downstream 145446 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_05672032_05717224.mRNA mRNA downstream 171289 5670007 ~ 5717656 (-) True CI01000010_05672032_05717224
CI01000010_05636005_05648665.mRNA mRNA downstream 240280 5635906 ~ 5648665 (-) True CI01000010_05636005_05648665
CI01000010_05627867_05634808.mRNA mRNA downstream 254137 5626570 ~ 5634808 (-) True CI01000010_05627867_05634808
CI01000010_05921406_05962819.mRNA mRNA upstream 31367 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_06083696_06089271.mRNA mRNA upstream 193786 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_06107283_06108881.mRNA mRNA upstream 215822 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06180084_06216445.mRNA mRNA upstream 290327 6180084 ~ 6216445 (-) True CI01000010_06180084_06216445
CI01000010_06253230_06263855.mRNA mRNA upstream 362609 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
TU73495 other downstream 646019 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1275389 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1652529 4229950 ~ 4236416 (-) False G64237
TU72970 other downstream 1989034 3899741 ~ 3899911 (-) False G64080
TU73846 other upstream 26500 5916257 ~ 5917011 (-) True G64877
TU73887 other upstream 203932 6093689 ~ 6096480 (-) False G64918
TU74496 other upstream 1773934 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1952879 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2751933 8641690 ~ 8674897 (-) True G67099

Expression Profile