Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU114179 |
| length | 1037 |
| lncRNA type | read_through |
| GC content | 0.46 |
| exon number | 5 |
| gene id | G100347 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 10753614 ~ 10763884 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU114198 | lncRNA | downstream | 8020 | 10746849 ~ 10749597 (-) | True | G100358 |
| TU114178 | lncRNA | downstream | 20245 | 10736953 ~ 10737372 (-) | True | G100346 |
| TU114183 | lncRNA | downstream | 20738 | 10736548 ~ 10736879 (-) | False | G100350 |
| TU114184 | lncRNA | downstream | 20738 | 10736587 ~ 10736879 (-) | True | G100350 |
| TU114191 | lncRNA | downstream | 75911 | 10665429 ~ 10681706 (-) | True | G100352 |
| TU114313 | lncRNA | upstream | 128993 | 10892877 ~ 10893117 (-) | True | G100469 |
| TU114314 | lncRNA | upstream | 129687 | 10893571 ~ 10893899 (-) | True | G100470 |
| TU114359 | lncRNA | upstream | 189059 | 10952943 ~ 10953475 (-) | True | G100508 |
| TU114361 | lncRNA | upstream | 192871 | 10956755 ~ 10957027 (-) | True | G100510 |
| TU114363 | lncRNA | upstream | 210762 | 10974646 ~ 10974875 (-) | True | G100512 |
| CI01000016_10740961_10745890.mRNA | mRNA | downstream | 11727 | 10739946 ~ 10745890 (-) | True | CI01000016_10740961_10745890 |
| CI01000016_10637748_10650217.mRNA | mRNA | downstream | 107400 | 10637639 ~ 10650217 (-) | True | CI01000016_10637748_10650217 |
| CI01000016_10600154_10633808.mRNA | mRNA | downstream | 123809 | 10599202 ~ 10633808 (-) | True | CI01000016_10600154_10633808 |
| CI01000016_10571262_10572444.mRNA | mRNA | downstream | 183749 | 10570705 ~ 10573868 (-) | True | CI01000016_10571262_10572444 |
| CI01000016_10443526_10488009.mRNA | mRNA | downstream | 269431 | 10442845 ~ 10488186 (-) | True | CI01000016_10443526_10488009 |
| CI01000016_10799559_10842613.mRNA | mRNA | upstream | 35301 | 10799185 ~ 10843409 (-) | True | CI01000016_10799559_10842613 |
| CI01000016_10897488_10911334.mRNA | mRNA | upstream | 132302 | 10896186 ~ 10911334 (-) | True | CI01000016_10897488_10911334 |
| CI01000016_10931329_10940939.mRNA | mRNA | upstream | 166928 | 10930812 ~ 10941053 (-) | True | CI01000016_10931329_10940939 |
| CI01000016_10970952_10971167.mRNA | mRNA | upstream | 206623 | 10970507 ~ 10971167 (-) | True | CI01000016_10970952_10971167 |
| CI01000016_10989691_11026452.mRNA | mRNA | upstream | 224493 | 10988377 ~ 11026452 (-) | True | CI01000016_10989691_11026452 |
| TU114011 | other | downstream | 705228 | 10051168 ~ 10052389 (-) | True | G100190 |
| TU112845 | other | downstream | 942662 | 9814361 ~ 9814955 (-) | True | G99178 |
| TU112535 | other | downstream | 1245189 | 9511357 ~ 9511415 (-) | True | G98896 |
| TU112534 | other | downstream | 1245255 | 9511357 ~ 9511415 (-) | False | G98896 |
