RNA id: CI01000026_04820538_04825963.mRNA



Basic Information


Item Value
RNA id CI01000026_04820538_04825963.mRNA
length 2030
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000026_04820538_04825963
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4820132 ~ 4826429 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAATGCAATGCACAACCCTCAGGTACACAAATATAAATGTTTACATTTTTTTTTGCAACTGCCAAAATTATCATTATACCTGAATAAAGTAATTGAATCTCAAAATGCCTAATGCCTTGTTTCTTTATTGTCCAAATATATAAGCTATATATACAGTATATGTGACATTGACAGTAAACTGTAAAAATAAAATAAAGGCTGACTTTACTATACTGTATATAGTTTCTTGAGTACATAATCTTTACTGAAAACATGTATTTACAACAGTTCAAAAATACAAGCACAGTAAACATGTTCTAGTCTTAGTTGTGTTTCTATGAGGTCTAGCGTTCAGACTTTTAAACAACTTCCGGTTCCGCTTCCGTGTGTAGTGTCAAATGTTAGAAGAGAATCCGTGTGAAAATGGAAGGGGATACAGCTTCTCTAAACATCTTTGGGGAAAGTAAAGCAGGATATGTCCTGAGTAATGTTGCCGAGGTCGTGGAGCGGATTTTGACATTTGTGCCGACTAAAAATCTCTTCCGGATAGCAAGGCTATGGAGGAATTGTGCACGCAGAGTCCTGAGGATGAGGCAGAGATTTACCTGGCTCTCCGCCTCTGGCTCATCCATATACGAGGAGCATGTTTTGCTTAGATCTATGGCACAAGACTTGGAGAAAATCTGTCTGCTGCCCCAGACAGCTCTCGTAATGGTAAATCATGAGAACTTCAGAGGGTCTGTTAGTAACAGACACAGGAAGGCCAGGAGGTGTGAGGATGAAGTGGAGCCAGATCCTCTTAAGAAGCTGAAACGCTTACTACCTAGCAGTTGTGACATACTAGGCATAGTCGCACCAGGAACTGTGGTGACCCCCAGTGGTTCACCCAGCAGCCCCCCACAGGAGCATGAGGAGGGTGAAGCTGGCTTCAGTCTGCTTTTCTCTGCCATGGATGGGATCACCATCCGGCCATTCCACTTCTGCAAAAAGACCCTCAGTGAAACGGCAATGCAGGAAGCAGGGTTGATTAATAACCCTGATCTAAAGGTGGTGCTGTTGTTCGACTACGACACCTATAAATCTGGAGGTGGACGTTTTCTTAACAAGCTTCTGGAACCGCTTTCCCAAAGTAATGTACTTATTGTTGGAGGACAAGTTGAGGATGTCTTTTCCATTAACATAAACTGCTGTCCTCCGGGCTCTTTTGGGGCAGTAGGGCTGACTTTCAGCGGCTCCAAGATCCAGGGTGCCTCGGTTCTAATAGAACAGGACGTAAACAGCCCGAAAGCAGCAGAAGCCACTATCCAGCGACTGAAGGCTGCTAATATCCCAGAGAAAAACACCGTGGGCTTCATGTTTGCTTGTGTGGGCCGCGGCCACAACATGTACAATGACCAGCGTAACGTGGAGGCTGACGCCTTTCGGAAGATCTTCTCCAACATTCCGCTCTTAGGATTCTTTGGAAACGGGGAGATCGGCTGCGACCGTATTGTCAAAGAGAACTACACATTGAGCGAGACAGATGCTGATGGACTACAGCACTCTTTTACTACAGTCATGAGTCTGGTGCATTTTGGCTAACACAAACTCTTGTACTGCAAGTGACTAGAAAACCACTAGTTAACATGAAGAAGTTTCAGGACAGACACCGGCTGCTTGTTTAAGTTAACGGAGCAGGTCCGATGTTGATCAGGTGTATTTCTTCTAGGTTCTTTCCCTTGACTTATTTTCTTTAAATCAGAATGTCAGAGGGACATTTAGCAGTTTTTTTGCAAAGAATATTTACAAGATTGCAATGTAAGAGCCCCTGCTGTGAACTAAAAGTGGCGGGTACAATTCTTACACCTTGTTTGTTAAGGTCATTACTTACAGAGCGGCTGTGAAGAACAGTTAAGATTTAGTTTGAATGGCATGGTGCTAAACCTTGACTTTAGACTTCAGTTATATGTTAACTCTCTTTGTGTAGAGCAGGGCTGAAATCTGTCAGCTGATCAGATTTCTTGTGGGCTCACTCAGGCTTTATACCATTCATTCAGGCATTTTTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145742 lncRNA upstream 70943 4748884 ~ 4749189 (+) True G128273
TU145692 lncRNA upstream 173232 4643897 ~ 4646900 (+) True G128223
TU145691 lncRNA upstream 177184 4641378 ~ 4642948 (+) True G128222
TU145684 lncRNA upstream 188063 4631834 ~ 4632069 (+) True G128219
TU145683 lncRNA upstream 192668 4625384 ~ 4627464 (+) True G128218
TU145788 lncRNA downstream 63017 4889446 ~ 4889697 (+) True G128316
TU145828 lncRNA downstream 79461 4905890 ~ 4906154 (+) True CI01000026_04905238_04906008
TU145833 lncRNA downstream 89251 4915680 ~ 4916311 (+) True G128354
TU145837 lncRNA downstream 96988 4923417 ~ 4924257 (+) True G128358
TU145838 lncRNA downstream 98101 4924530 ~ 4924741 (+) True G128359
CI01000026_04812926_04818639.mRNA mRNA upstream 968 4812926 ~ 4819164 (+) True CI01000026_04812926_04818639
CI01000026_04773209_04807191.mRNA mRNA upstream 12570 4771859 ~ 4807562 (+) True CI01000026_04773209_04807191
CI01000026_04593208_04599259.mRNA mRNA upstream 220595 4593130 ~ 4599537 (+) True CI01000026_04593208_04599259
CI01000026_04556074_04556964.mRNA mRNA upstream 262519 4555955 ~ 4557613 (+) False CI01000026_04556074_04556964
CI01000026_04503901_04507434.mRNA mRNA upstream 311439 4503901 ~ 4508693 (+) True CI01000026_04503901_04507434
CI01000026_04848513_04851412.mRNA mRNA downstream 22084 4848513 ~ 4851843 (+) True CI01000026_04848513_04851412
CI01000026_04872499_04877980.mRNA mRNA downstream 46070 4872499 ~ 4878351 (+) True CI01000026_04872499_04877980
CI01000026_04891501_04898456.mRNA mRNA downstream 65072 4891501 ~ 4899035 (+) True CI01000026_04891501_04898456
CI01000026_04905238_04906008.mRNA mRNA downstream 78638 4905067 ~ 4907336 (+) False CI01000026_04905238_04906008
CI01000026_04974839_04980270.mRNA mRNA downstream 148410 4974839 ~ 4980909 (+) True CI01000026_04974839_04980270
TU145659 other upstream 263815 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 388931 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 488047 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 1057146 3752551 ~ 3762986 (+) True G127979
TU145006 other upstream 2159303 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU146089 other downstream 1123384 5949813 ~ 5950122 (+) True G128585
TU146105 other downstream 1157450 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 1499767 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 1499849 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 2268624 7095053 ~ 7096652 (+) True G130552

Expression Profile