RNA id: CI01000026_04905238_04906008.mRNA



Basic Information


Item Value
RNA id CI01000026_04905238_04906008.mRNA
length 2270
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000026_04905238_04906008
representative False

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4905067 ~ 4907336 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAGGCATCTGGCCATCATAAAGACCTTTCTGAGCTCACGATGTGCGATTAGTCATTTGTCAGTCTAGTCAGTCTTTGTTCTGACATTTGACCAAGTGAATATTTGCATACATTGCTGAATAACAAATTGGAAATTAGCATTTATATATATTTACTGAGTCTGTCTAATGACTGTATTTACTCACTGGCTTTCCACAGAAGAGATGAAGATTGTCTGGGTTGCTTTTTTCCTCTCAGCTCATTGTGAGCTGACTTTAACTTTGATCAGGAAACACTTTTTTATTAATAACGCTGTGTCTTGGAGTGATGCTCAGAAGTTTTGTCGAGAGAATTATGTCGACCTTTCCACTGTAGACAGCCAAGAGGAACTTGACAGGTTAAGTCGCGATACAAATGATCAGAAGAGCACAGAGAGCTGGGTTGGTCTGAGCAAGCCCTCTGCTAACGACAAATGGGTGTGGAGTGATGGAAGCGAAGAAACTTTTCAAAAGTGGAAAAGTGGTCAACCAAGTGACCCAGGCACTGAATTTTGTGCCAGGATTTCAACTGGTGAATTGATGGACCTCTCATGTAATGAAAAGAAGCCTTTTTTCTGTTACAAGTGGGTGCCTGAACTGATTCTGGTAAGGGAGAACAAGACCTGGGAGGAAGCGTTCGAACACTGCAAGACTAAACACTCTGGCTTAGCCTGTCTGCCAACCAGTTTACACCTCTTACAAGCCCAAAGCAAGACTGCAGTCACTCAAACCCCCAGTGTGTGGACAGGTTTGCGCTTCCTGTCGGGTTCCTGGTTCTGGGTGAGTGGGGAATCTCTGGGAAATTTGGTCCAGCTGCCAGCATGCCCTGCCAATGGTCTTTACTGTGGATCTCGAAACCTGCAAGCTAAAAGTTGGGAGAACAGAAACTGTACAGAGAAACTTAACTTTTTATGTTACTAAAGAGAAGGGTAAGAACCAAAGCATACATTTGTGTTTCAATCAATATATTGCTAATATTAATGAAGACACATTTTTCATTGTCTATGTTTAATCTAAAACAAATGTTGTAAATAAAATTAAAGGGATAGTTCACCCAAAAATGAAAATTTGATGTTTATCTGCTTACCCCCAGGGCATCCAAGATGTAGGTGACTTTGTTTCTTCAGTAGAGCACAAATCTCGTATTTGAGAGCGTATTTGTCAATGAGTGCGAGCGATCACTTACGGCATCAGAGTGCATTCAGACCTCACCAACCGGACGCGCAAGTCAGTTGGACATAGTGGTGTATTAGAAGTAAAAAATGATATAAATACTGTACGGTTTCTCACACAAACTGATCGTTTCGTGTCTTAGGACATTAATGTGTCATCACGAGCCGCAGGGTTTAATTTGGATTTGTCTGTGCATGTTTTTTTGACTCTTATAAATGGAGTTCCCATTGCCATGCATTATACGACTGACAGACCGCAACGGTTGGAGTTAAAAATCATAATTTGTGTTCTACTGAAGAAACAAAGTCACCTACATCTTGGATGCCCTGGGTGTAAGCAGATAAACATCAAATTTTCATTTTTGGGTGAACTATCCCTTTAACATGTATAGTTGAAGACACTCATTTATGCATTTGGCACATTTAAAGTTAACATTAATATATATTCATATAATTAGACTTTTAATGGTATACCGGTATGACATGTAGGCTACGATTATCATATTGTGCACATTTGCTTATCTACGGTATAAAAAAAAATAATTAGACGGAGAATCTCACCTGGGCATAAGCAACTTCTTTCCACTTGACTGCTTAGACTTTCAACTTGCTCCACACACATACAGTGGAGAAAATGTCAGAGACAGAGACTGTTATCTCTAATCTCTATCCCCGTCGAAAAATAAGTTAAAATTTGCAGTATGAGAATACTCTAGACATAGAAAAAAATGGATTTTACAGTAGGCAGTATGAATAAATTGAAAGTAGAGCTGTACAATAAATCAAATCACGACATGGTCTGTGAATATTAACGTGCAGAAAGACTACTATATAAATATAGAATCTGCTCGTTCTGTGTGTCTCTGTGTAAATGAGCAGGATGTTTTATCTACTAATTATGCGTTTTCAGTGCCTATAGGACGTGTCATGAACACATGAACATCTCAAGAGCTGCTAAGAGAGAACGCTTAATGAGCATTTCATCATTTTATTTGAGAAAAACCATTGTCAAATACACTCTGAAACTCAAAGGTCTTCACTACAACCCGTCAAAATAAAAGTTTCAAGTTTGTTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145788 lncRNA upstream 15370 4889446 ~ 4889697 (+) True G128316
TU145742 lncRNA upstream 155878 4748884 ~ 4749189 (+) True G128273
TU145692 lncRNA upstream 258167 4643897 ~ 4646900 (+) True G128223
TU145691 lncRNA upstream 262119 4641378 ~ 4642948 (+) True G128222
TU145684 lncRNA upstream 272998 4631834 ~ 4632069 (+) True G128219
TU145833 lncRNA downstream 8344 4915680 ~ 4916311 (+) True G128354
TU145837 lncRNA downstream 16081 4923417 ~ 4924257 (+) True G128358
TU145838 lncRNA downstream 17194 4924530 ~ 4924741 (+) True G128359
TU145821 lncRNA downstream 19200 4926536 ~ 4928831 (+) True G128344
TU145817 lncRNA downstream 27822 4935158 ~ 4955766 (+) True G128340
CI01000026_04891501_04898456.mRNA mRNA upstream 6032 4891501 ~ 4899035 (+) True CI01000026_04891501_04898456
CI01000026_04872499_04877980.mRNA mRNA upstream 26716 4872499 ~ 4878351 (+) True CI01000026_04872499_04877980
CI01000026_04848513_04851412.mRNA mRNA upstream 53224 4848513 ~ 4851843 (+) True CI01000026_04848513_04851412
CI01000026_04820538_04825963.mRNA mRNA upstream 78638 4820132 ~ 4826429 (+) True CI01000026_04820538_04825963
CI01000026_04812926_04818639.mRNA mRNA upstream 85903 4812926 ~ 4819164 (+) True CI01000026_04812926_04818639
CI01000026_04974839_04980270.mRNA mRNA downstream 67503 4974839 ~ 4980909 (+) True CI01000026_04974839_04980270
CI01000026_04985417_04990345.mRNA mRNA downstream 78081 4985417 ~ 4990376 (+) True CI01000026_04985417_04990345
CI01000026_05004965_05013169.mRNA mRNA downstream 97629 5004965 ~ 5013588 (+) True CI01000026_05004965_05013169
CI01000026_05021876_05024530.mRNA mRNA downstream 114540 5021876 ~ 5025921 (+) True CI01000026_05021876_05024530
CI01000026_05029732_05031509.mRNA mRNA downstream 122186 5029522 ~ 5032401 (+) True CI01000026_05029732_05031509
TU145659 other upstream 348750 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 473866 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 572982 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 1142081 3752551 ~ 3762986 (+) True G127979
TU145006 other upstream 2244238 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU146089 other downstream 1042477 5949813 ~ 5950122 (+) True G128585
TU146105 other downstream 1076543 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 1418860 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 1418942 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 2187717 7095053 ~ 7096652 (+) True G130552

Expression Profile