RNA id: CI01000026_05633305_05636501.mRNA



Basic Information


Item Value
RNA id CI01000026_05633305_05636501.mRNA
length 944
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000026_05633305_05636501
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5633305 ~ 5636938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGTAGTTTGGTCTCTGTATATTAAAACATGCTTCCTTTTAAGGAGACTTGACATAGACATCATCTTTCAGAGGCTCAAACTGGAATTAAACAAGTCTGGCGTGTTAATTGAGATTTACACGAATAGGTCAGCGAAGAGCTATTTGTTTAGTCGAAACGTTGGTGTTTTATCTCACAAATCGACGCAGAGTAAAGTGAATTTGTCAGATCGTTGGCTCATGATAGCTCAGAACGGGTTTCTCTCGCTGTCCAGAGCATCTCTCCCGGCTGAGGGAGTTTCGAACCCGGACTCGCATCATGCTTTCTCTGGGAGTTTCACAGATGGTGCTCGGGAGTCTCATTTTGGCTGTCAGTTTCGCCGCTTTGGCCCTTACTACATCTCCGAGGGTGAGACATTCGTGTCCCTTTTGGGCTGGATTCTCGACGCTGATGTAGTGCATGCAGCAGATAAGGAAACGTGTGGCTGTCAGAAAGCTCAGCTGGTTCTTGTTATCAGTATGATTTGATGTGCGTTTCATGGATTTGTGTCTATGTATAGGTGCAGGGGCGATTAGCTGGTTCTAAATATCTAATAGGGTTTTGTAATAGATTTTGCACCTCTGGGTTCTGGTGGGAGGCAGATGGCTGTGTGTCCAGGCCTGATGTCAAAGCACCAGCGAGTTGGTGAACATGCTGTTCTCCTCACAGGAGTGGACTGGGCGGCTGATGCATAATGGAGCTCTGCAGAATTACTTTTGCCAATCAGAGTCTGGATTAATGGTGTGATCCTGAGTGAGCGGAGCAGCGGGATGAACAGCATGTGTGCTTGTCCTTGTGCAGGATAGGGATGTGCACGAGTACTCGAGTCATAAAGACTATGGTCACCTTTCTTTTTCTGATTGGTTATTGCGGCATTTTGTGTGATTGGTTAGTGTTTGGACAGTATGCCGTTCAGACCGGCGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146027 lncRNA upstream 131174 5501918 ~ 5502131 (+) True G128525
TU146024 lncRNA upstream 137013 5496009 ~ 5496292 (+) True G128522
TU146023 lncRNA upstream 139362 5493606 ~ 5493943 (+) True G128521
TU146022 lncRNA upstream 140316 5492664 ~ 5492989 (+) True G128520
TU146016 lncRNA upstream 153977 5479120 ~ 5479328 (+) True G128514
TU146063 lncRNA downstream 231318 5868256 ~ 5868582 (+) True G128560
TU146064 lncRNA downstream 231999 5868937 ~ 5869164 (+) True G128561
TU146065 lncRNA downstream 236545 5873483 ~ 5873730 (+) True G128562
TU146066 lncRNA downstream 245155 5882093 ~ 5882325 (+) True G128563
TU146067 lncRNA downstream 245642 5882580 ~ 5882878 (+) True G128564
CI01000026_05592701_05627231.mRNA mRNA upstream 5375 5592701 ~ 5627930 (+) True CI01000026_05592701_05627231
CI01000026_05560160_05585916.mRNA mRNA upstream 47201 5559861 ~ 5586104 (+) True CI01000026_05560160_05585916
CI01000026_05499147_05532039.mRNA mRNA upstream 100985 5498793 ~ 5532320 (+) True CI01000026_05499147_05532039
CI01000026_05468694_05469437.mRNA mRNA upstream 163785 5468694 ~ 5469520 (+) True CI01000026_05468694_05469437
CI01000026_05437276_05463050.mRNA mRNA upstream 169570 5437033 ~ 5463735 (+) True CI01000026_05437276_05463050
CI01000026_05742174_05769229.mRNA mRNA downstream 105236 5742174 ~ 5769370 (+) True CI01000026_05742174_05769229
CI01000026_05771496_05786357.mRNA mRNA downstream 134558 5771496 ~ 5786357 (+) True CI01000026_05771496_05786357
CI01000026_05793556_05805041.mRNA mRNA downstream 156618 5793556 ~ 5805125 (+) True CI01000026_05793556_05805041
CI01000026_05809690_05817205.mRNA mRNA downstream 172752 5809690 ~ 5817473 (+) True CI01000026_05809690_05817205
CI01000026_05820062_05827011.mRNA mRNA downstream 183124 5820062 ~ 5827425 (+) True CI01000026_05820062_05827011
TU145659 other upstream 1076988 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 1202104 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 1301220 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 1870319 3752551 ~ 3762986 (+) True G127979
TU145006 other upstream 2972476 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU146089 other downstream 312875 5949813 ~ 5950122 (+) True G128585
TU146105 other downstream 346941 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 689258 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 689340 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 1458115 7095053 ~ 7096652 (+) True G130552

Expression Profile