RNA id: CI01000026_05820062_05827011.mRNA



Basic Information


Item Value
RNA id CI01000026_05820062_05827011.mRNA
length 2433
RNA type mRNA
GC content 0.46
exon number 15
gene id CI01000026_05820062_05827011
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5820062 ~ 5827425 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGGCTCTGCCTGGCTCTGGCCATTTGTCTATGCTGGGTTCTCTTGTGAGTGGAGTGAAGGTGGAGACTCTATGGACTTTACCGTCTGATGTTCTGCTGGAAGCGCTGCCTGGCATGAGCCTTCAGACACCTGGGCTCACCCCCCCTCAGGTCAACGCCATCATCTGCAGACTCTGGGGTTCTAGTTCTGTGTCCCAGTGGATGGATAAAGTCAAACCTTTGCTCTCTAGCACTCCACTCCTCAGTGTGATTCCCCAAGTCCCTCTCCTTCTGGTCAGAGACACTGCTGTAAACACTCGCCTCTGGAACACACAGCAGGCTAAAGTTATCTTTAAAGAGGCTATCTTCTCCCACCCAAGCCTCTCACTACAGGAATTTCTGTCTCTGGGGACAGTGGCTACGGGAGTGGATTGCACAGACCTTAGAAGATTGTTCCAAAACCTGGCATCTCTATCTCCTATACGTGAAATTCTGACGTTTCTGAGAGAGCTGCCTGTGCCACTCCACTCCTCATTGATAAAGTGTATAATTGAGGATCTGTATCAGTTTGACTTCTTCCCAGAGTTACTTGGAGATTTGGGCTCTCAGATTGCTCTGTCACTTCCGCTGAGCACCATTAAGAAATTTCCTCCAGATAAGATGGATTCCCTAAGGAAAATTATAGTACAGGATCCACATTTCTTCCTGCTGCTTCCTAGCAACAAACAAGCTGTCCTGGTGGACAAGATGGTTCAAAGACTGGATATGTACACTGGCCTGTACACTGAAGAGGAGTTTCGTTCGCTAGGTGTCATGGCTACATTTGTGGCAGATGAAATGTTTTTGAATTTGGATAGGAGCTTCTTTGTTGAAAGTCTGGAGTTCCTACGAGGATTCTGCTACAATGTCAGTAAAAGAGCCCAGGTGGCGCGCATGCTACTGGAACCGGGGACATTTGGCCCTGTACCAAACTGGACATCAGAGACACTGAACCAAGTGGACCGCTTTTTGTTTTTTCTTCCAAATGAGAATATTAAACTCATCCCCTTAGGTTTGATGAGCTTAGAGCGCATTGAGAGGCTGTTCCTGAGTCAGCAGAAGTGGGAGAGTGGAGAGCTTGGTTCTCTGTGTCAGAAACCCTCCGAGCTGTTTGACAGGCAGCAGTTTGTGCTTCAGTTCTTCCTCGGCTTCCTCAGAACGGGACTCGCCACTTTTCCTGGGCTGATCCCCACTTGTGAGAACCTACATGTCACACAGCCTGCTGCCTGGAGTATTGATAGCATTAGAAACATGCCACCAGCTGCATTTCGGAGGTGCTTGGAGCTCATTGGCCAGGATCCATTTTTCAGTGCATACCAGCTATCAGTGCTCCTTACGAAGACCAAGGAGGTATATGGGATGCCTTCTTCTTTTAACTCTTCTGTGATCTCTCAGTTGGGTCGCATTGCCACGCAGCTCTCACTTGACGAATTGGCCTCTCTTAGACTGTCTGAAATTCAGTCAATTTCAGCTATTGGGGCTCTCAACTCGTGGACCAGCAGACAGTTGAAAACATTATTCTCCACGGTGCTGAATTCAACCAGAAAGACTCCTGGCCAGTTAGACTCCAGCACTTTTGTGGCTTTGGGGCACATTGTGTGTGGGATTGATGCATCAGTCATGCGCAACTTAAATCCAGTGGAATTCAGTAAGGCAGTTTTGTGGCTGGGCCGTTTGCGTTTGTCCTGTTCTGAGGAGCAGCTGCAGGGATTGATAGGACTGCTCAGTCATAGCTTGGCATTTGGACCGGTAGTGTTTAACCAGGCACAGATTAGTATGTTCACATATGATCAGGCCATTGCTGTAACTGACCCCCAGCGCAACGCTCTATCTCCAGTACAGCAGACAGCCCTGTACATGGTGCTCAACCCCGCAGAGGACAAACCTATTACAATCAGAGGCTTGTCCCTGGGAGTTGCAGTGCACCCCTGTCCTTTTCTCTACCTCTCCAGCATCCTGATAATGCTGCTGTTGCTTTCTCCTGCTAACCCTCTGGGATGAGTTTGGTCTGTCGCTGCTGAATTGCTGCTATACTCAGTTGAACTCTTCTTTCCAAACATGTGCAATATGATGTAACTTTAAGACTGTAAATATATATTTTCAGCACTTTTAAAATGCTGAATGGGTTCCATGAAATTGGAAAAAAGTATGAGAAGAATAACTCATGGAAATACTTCTTTCAGCACTTTATAATAGTTGGTCAGTCGTGATAATGTGATTTTGTTTGATTGTTTTTGAATAATTGCTTGCTTGGAGATTAATGTATCATTCTAGATCTGTATTCAGTTTGACGTATGCTTTATATTCTACTTTTTGTCTTGTTTTTATTAATATTATTTACTTTTTTAACTGCTTTAACAGACTTCATACAATGAAATGCTGGAAAAATATCAGAAGGGGTTGTATTAACTTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU146027 lncRNA upstream 317931 5501918 ~ 5502131 (+) True G128525
TU146024 lncRNA upstream 323770 5496009 ~ 5496292 (+) True G128522
TU146023 lncRNA upstream 326119 5493606 ~ 5493943 (+) True G128521
TU146022 lncRNA upstream 327073 5492664 ~ 5492989 (+) True G128520
TU146016 lncRNA upstream 340734 5479120 ~ 5479328 (+) True G128514
TU146063 lncRNA downstream 40831 5868256 ~ 5868582 (+) True G128560
TU146064 lncRNA downstream 41512 5868937 ~ 5869164 (+) True G128561
TU146065 lncRNA downstream 46058 5873483 ~ 5873730 (+) True G128562
TU146066 lncRNA downstream 54668 5882093 ~ 5882325 (+) True G128563
TU146067 lncRNA downstream 55155 5882580 ~ 5882878 (+) True G128564
CI01000026_05809690_05817205.mRNA mRNA upstream 2589 5809690 ~ 5817473 (+) True CI01000026_05809690_05817205
CI01000026_05793556_05805041.mRNA mRNA upstream 14937 5793556 ~ 5805125 (+) True CI01000026_05793556_05805041
CI01000026_05771496_05786357.mRNA mRNA upstream 33705 5771496 ~ 5786357 (+) True CI01000026_05771496_05786357
CI01000026_05742174_05769229.mRNA mRNA upstream 50692 5742174 ~ 5769370 (+) True CI01000026_05742174_05769229
CI01000026_05633305_05636501.mRNA mRNA upstream 183124 5633305 ~ 5636938 (+) True CI01000026_05633305_05636501
CI01000026_05828041_05831860.mRNA mRNA downstream 616 5828041 ~ 5832009 (+) True CI01000026_05828041_05831860
CI01000026_06109467_06140429.mRNA mRNA downstream 282042 6109467 ~ 6141599 (+) True CI01000026_06109467_06140429
CI01000026_06174460_06187224.mRNA mRNA downstream 346464 6173889 ~ 6187476 (+) True CI01000026_06174460_06187224
CI01000026_06234663_06316874.mRNA mRNA downstream 407238 6234663 ~ 6316874 (+) True CI01000026_06234663_06316874
CI01000026_06332081_06337355.mRNA mRNA downstream 504314 6331739 ~ 6337396 (+) True CI01000026_06332081_06337355
TU145659 other upstream 1263745 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 1388861 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 1487977 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 2057076 3752551 ~ 3762986 (+) True G127979
TU145006 other upstream 3159233 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU146089 other downstream 122388 5949813 ~ 5950122 (+) True G128585
TU146105 other downstream 156454 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 498771 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 498853 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 1267628 7095053 ~ 7096652 (+) True G130552

Expression Profile