RNA id: CI01000026_07874837_07876094.mRNA


Basic Information

Item Value
RNA id CI01000026_07874837_07876094.mRNA
length 564
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000026_07874837_07876094
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7874837 ~ 7876199 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAAATTCTTATCACAAACTCAGATTGATGAGTTCAAAGAATGTTTCTCACTTTATGACAAGAAGCGAAAGGGGAAGATTGAAGCCAAAGACCTTATTACTGTCATGCGCTGTTTGGGTACAAGTCCCACATATAATGAAGTGGACAGACATCTGCAAATCCACAAAATAGATAAGAGAGGGGAGCTGGACTTTTCTACATTTCTAACCATGATGCACAGACAGATGCAGCAGGAGGATCCTAAGACTGAAATTCTGGAGGCTATGCGCATGACAGACAAACACAAGAAGGGCTACATTCTGGCCTCTGAGCTACGGGCTAAACTCACTGGCTTGGGAGAAAAGCTTACTGGAAAAGAAGTGGATGAGCTTTTTAAAGAGGCTAATGTTGGACGTGATGGACTCGTTTATTATGAGGAGTTCACCAGAATGGTCACACTTCCTACAGTGGACTACTAATGAAGAAGAGTGGGTTTGGCCCTTACCCTGAATAATGCAGTTATTTACTAGCAAGAATGAGATATTTTTGTTCTGTGTATACATTGTATATAAAATAACAAGTCA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148802 lncRNA upstream 59971 7803928 ~ 7814866 (+) False G130857
TU148803 lncRNA upstream 69690 7803928 ~ 7805147 (+) True G130857
TU148780 lncRNA upstream 87920 7785163 ~ 7786917 (+) True G130843
TU148811 lncRNA upstream 123064 7751567 ~ 7751773 (+) True G130865
TU148810 lncRNA upstream 124370 7750257 ~ 7750467 (+) True G130864
TU148875 lncRNA downstream 1155 7877354 ~ 7877768 (+) True G130910
TU148859 lncRNA downstream 45975 7922174 ~ 7926132 (+) True G130894
TU148927 lncRNA downstream 299062 8175261 ~ 8176018 (+) True G130962
TU148956 lncRNA downstream 326642 8202841 ~ 8203962 (+) True G130986
TU148963 lncRNA downstream 340751 8216950 ~ 8217316 (+) True G130993
CI01000026_07872070_07873313.mRNA mRNA upstream 1480 7871575 ~ 7873357 (+) True CI01000026_07872070_07873313
CI01000026_07766716_07782894.mRNA mRNA upstream 91845 7766716 ~ 7782992 (+) True CI01000026_07766716_07782894
CI01000026_07763144_07765276.mRNA mRNA upstream 109501 7762708 ~ 7765336 (+) True CI01000026_07763144_07765276
CI01000026_07716356_07721570.mRNA mRNA upstream 153232 7716356 ~ 7721605 (+) True CI01000026_07716356_07721570
CI01000026_07177994_07186042.mRNA mRNA upstream 687288 7177994 ~ 7187549 (+) True CI01000026_07177994_07186042
CI01000026_07900733_07907266.mRNA mRNA downstream 24534 7900733 ~ 7908808 (+) True CI01000026_07900733_07907266
CI01000026_07911644_07954640.mRNA mRNA downstream 35445 7911644 ~ 7954640 (+) True CI01000026_07911644_07954640
CI01000026_07965621_07990576.mRNA mRNA downstream 89377 7965576 ~ 7990643 (+) True CI01000026_07965621_07990576
CI01000026_08031599_08081760.mRNA mRNA downstream 155400 8031599 ~ 8081905 (+) True CI01000026_08031599_08081760
CI01000026_08096241_08097257.mRNA mRNA downstream 219364 8095563 ~ 8097604 (+) True CI01000026_08096241_08097257
TU148442 other upstream 778185 7095053 ~ 7096652 (+) True G130552
TU146291 other upstream 1548052 6326196 ~ 6326785 (+) False G128757
TU146290 other upstream 1548052 6326278 ~ 6326785 (+) True G128757
TU146105 other upstream 1883076 5983879 ~ 5991761 (+) True G128601
TU146089 other upstream 1924715 5949813 ~ 5950122 (+) True G128585
TU148937 other downstream 312175 8188374 ~ 8189073 (+) True G130967
TU148972 other downstream 422374 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU149067 other downstream 625209 8501408 ~ 8506787 (+) True G131077
TU150881 other downstream 1692540 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 2283620 10159819 ~ 10161961 (+) True G133192

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066264 False 663 mRNA 0.41 5 NC_007118.7 34492744 ~ 34496196 (+)