RNA id: TU148802



Basic Information


Item Value
RNA id TU148802
length 1125
lncRNA type antisense_over
GC content 0.53
exon number 7
gene id G130857
representative False

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7803928 ~ 7814866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATAAAATTCTCTTCATTCAGACTCCGTGTATCAAACTGCCGTGTCGATTTCCCAGAGGAGGGTGGTGGCAATTGTATACGCGGTACCAGGAGCACGCCTGCCGCCCTGGCGCTCTCCATTCGGCCTGATGGGCTCTCCTTACTGCCTGGGCTGCTAATCCCCTCTGTGGGGCTCCGTTTCCGCTTCTCTGGGTCTTTGGTTTGGTAGTGGGTGCGCGCTATCTCTAGCAGACTGAAGACACTGGCCATGCCTCCCAGGCCAGCATTAGTGTAAGAGTGCTCCAAACTGGACACTGTGCACTTCAATAGGTCCAGCATGCCTTTGTACACCTTCCTGTTTATCTCCACATCTCTTATAACTTCCTGCTGAGCGTCTTCCTCTGATTGGACCGCACGGTTGAGTTTACTGAGCACAAAGACACGCAGCTGTTCGTTCTCTAGCAGGCGGCGTACCTTCTTCATGTTGAGCCAGCCCACACCCTGCCCATCGAGCACGCTCTGGACCACCTCCTTAAGAAACTGCTGGTTCTCACTGGTGTTGTTGGCTCTGCCCTGAGGAGATGGAGACTCTCTCTTGACAGTGGGGCTGTGCTTAATAACAGAGGATTTCTGATCTACCAGCGCTCTGGGAGCTCGTGCACCTTTGAGGCTGGGGAACGGTGTGTTCTTCTCTCGCGCTTTATTAGGCAAAGCCAGACTGGACAGACTGAAACTGGTGCCGTGGTTTTTATACAGGTTACTGGCGAAGGACATGAGTCCCCCGAAGCCATCGTTGCTATTGTTGGAGATGGTGGAGTTCGGAGAGCTATTTCTGGAGTCTCCCTCCCCGTCAGATTCACCCGGAAGCTTCAGACTGCTGGGTCTCAATGGACGTGATGGCTTGTTGCCATTAAGATTCTGGCTGAATCGTGGTGTGTAACTCTCCTCCTGCTCATCTGCTTCTGCATCCTCTTCTGTAGGGAAGCCGTACTGGGGCTCAAAATAGGGATTATCATACTCTTGCTTCTTATTGCCTGGGTCAACAGGCACCGGATCAAGGGCAGGTCTTGTAAAAGGTTGAGCACCCAATCCTGGGACAGAGTTCTGGAGGGCCACACTTGTTGTCGCCTCCACCTCAATAGGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148780 lncRNA upstream 17011 7785163 ~ 7786917 (+) True G130843
TU148811 lncRNA upstream 52155 7751567 ~ 7751773 (+) True G130865
TU148810 lncRNA upstream 53461 7750257 ~ 7750467 (+) True G130864
TU148778 lncRNA upstream 77261 7725309 ~ 7726667 (+) True G130842
TU148766 lncRNA upstream 93774 7706999 ~ 7710154 (+) True G130840
TU148875 lncRNA downstream 62488 7877354 ~ 7877768 (+) True G130910
TU148859 lncRNA downstream 107308 7922174 ~ 7926132 (+) True G130894
TU148927 lncRNA downstream 360395 8175261 ~ 8176018 (+) True G130962
TU148956 lncRNA downstream 387975 8202841 ~ 8203962 (+) True G130986
TU148963 lncRNA downstream 402084 8216950 ~ 8217316 (+) True G130993
CI01000026_07766716_07782894.mRNA mRNA upstream 20936 7766716 ~ 7782992 (+) True CI01000026_07766716_07782894
CI01000026_07763144_07765276.mRNA mRNA upstream 38592 7762708 ~ 7765336 (+) True CI01000026_07763144_07765276
CI01000026_07716356_07721570.mRNA mRNA upstream 82323 7716356 ~ 7721605 (+) True CI01000026_07716356_07721570
CI01000026_07177994_07186042.mRNA mRNA upstream 616379 7177994 ~ 7187549 (+) True CI01000026_07177994_07186042
CI01000026_07160036_07169929.mRNA mRNA upstream 633597 7159592 ~ 7170331 (+) True CI01000026_07160036_07169929
CI01000026_07872070_07873313.mRNA mRNA downstream 56709 7871575 ~ 7873357 (+) True CI01000026_07872070_07873313
CI01000026_07874837_07876094.mRNA mRNA downstream 59971 7874837 ~ 7876199 (+) True CI01000026_07874837_07876094
CI01000026_07900733_07907266.mRNA mRNA downstream 85867 7900733 ~ 7908808 (+) True CI01000026_07900733_07907266
CI01000026_07911644_07954640.mRNA mRNA downstream 96778 7911644 ~ 7954640 (+) True CI01000026_07911644_07954640
CI01000026_07965621_07990576.mRNA mRNA downstream 150710 7965576 ~ 7990643 (+) True CI01000026_07965621_07990576
TU148442 other upstream 707276 7095053 ~ 7096652 (+) True G130552
TU146291 other upstream 1477143 6326196 ~ 6326785 (+) False G128757
TU146290 other upstream 1477143 6326278 ~ 6326785 (+) True G128757
TU146105 other upstream 1812167 5983879 ~ 5991761 (+) True G128601
TU146089 other upstream 1853806 5949813 ~ 5950122 (+) True G128585
TU148937 other downstream 373508 8188374 ~ 8189073 (+) True G130967
TU148972 other downstream 483707 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU149067 other downstream 686542 8501408 ~ 8506787 (+) True G131077
TU150881 other downstream 1753873 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 2344953 10159819 ~ 10161961 (+) True G133192

Expression Profile