RNA id: TU148875


Basic Information

Item Value
RNA id TU148875
length 415
lncRNA type intronic
GC content 0.36
exon number 1
gene id G130910
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7877354 ~ 7877768 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCATTGACAGTTTACGCAACTACCACTTTGACACTTCAAAAAGTTCATAAGATTGTAAAATGAATCCATATGAATTGAGCAGTTTAGTCCAAATTTTCTGAAGAGACTCGATCACTTTATATGATGAACAGATTTACTTTAGGCTTTTATTCACATATAAACATTTATCAGAGCACACATCAAATATGGTAAACGGAAGCTCAAGCATGTTTGCTTGACATGTGAAAACCAATGAGGTTCATTCTCGTGTGTTACGCAGCACGTTTGAACTACCGCAAGAACCGATGAGCTTTGTTCTCGCACGCCAAGCAAGTACGATTAAGCTTCTGTAACTGTTTATGTTCGCTGGTCAATGTTTAAATGTGGATAAAAGCCTATATTTAGTCTGTTCATCATATAAAGCAATCGTGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148802 lncRNA upstream 62488 7803928 ~ 7814866 (+) False G130857
TU148803 lncRNA upstream 72207 7803928 ~ 7805147 (+) True G130857
TU148780 lncRNA upstream 90437 7785163 ~ 7786917 (+) True G130843
TU148811 lncRNA upstream 125581 7751567 ~ 7751773 (+) True G130865
TU148810 lncRNA upstream 126887 7750257 ~ 7750467 (+) True G130864
TU148859 lncRNA downstream 44406 7922174 ~ 7926132 (+) True G130894
TU148927 lncRNA downstream 297493 8175261 ~ 8176018 (+) True G130962
TU148956 lncRNA downstream 325073 8202841 ~ 8203962 (+) True G130986
TU148963 lncRNA downstream 339182 8216950 ~ 8217316 (+) True G130993
TU148964 lncRNA downstream 339915 8217683 ~ 8218352 (+) True G130994
CI01000026_07874837_07876094.mRNA mRNA upstream 1155 7874837 ~ 7876199 (+) True CI01000026_07874837_07876094
CI01000026_07872070_07873313.mRNA mRNA upstream 3997 7871575 ~ 7873357 (+) True CI01000026_07872070_07873313
CI01000026_07766716_07782894.mRNA mRNA upstream 94362 7766716 ~ 7782992 (+) True CI01000026_07766716_07782894
CI01000026_07763144_07765276.mRNA mRNA upstream 112018 7762708 ~ 7765336 (+) True CI01000026_07763144_07765276
CI01000026_07716356_07721570.mRNA mRNA upstream 155749 7716356 ~ 7721605 (+) True CI01000026_07716356_07721570
CI01000026_07900733_07907266.mRNA mRNA downstream 22965 7900733 ~ 7908808 (+) True CI01000026_07900733_07907266
CI01000026_07911644_07954640.mRNA mRNA downstream 33876 7911644 ~ 7954640 (+) True CI01000026_07911644_07954640
CI01000026_07965621_07990576.mRNA mRNA downstream 87808 7965576 ~ 7990643 (+) True CI01000026_07965621_07990576
CI01000026_08031599_08081760.mRNA mRNA downstream 153831 8031599 ~ 8081905 (+) True CI01000026_08031599_08081760
CI01000026_08096241_08097257.mRNA mRNA downstream 217795 8095563 ~ 8097604 (+) True CI01000026_08096241_08097257
TU148442 other upstream 780702 7095053 ~ 7096652 (+) True G130552
TU146291 other upstream 1550569 6326196 ~ 6326785 (+) False G128757
TU146290 other upstream 1550569 6326278 ~ 6326785 (+) True G128757
TU146105 other upstream 1885593 5983879 ~ 5991761 (+) True G128601
TU146089 other upstream 1927232 5949813 ~ 5950122 (+) True G128585
TU148937 other downstream 310606 8188374 ~ 8189073 (+) True G130967
TU148972 other downstream 420805 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU149067 other downstream 623640 8501408 ~ 8506787 (+) True G131077
TU150881 other downstream 1690971 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 2282051 10159819 ~ 10161961 (+) True G133192

Expression Profile