RNA id: TU197144


Basic Information

Item Value
RNA id TU197144
length 327
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G173550
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 495181 ~ 495507 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCACAATATACAAATTCATGGGTATAGGACAGATATTGTGAAAATGCTATAGCACTTATTTTATAAAACATCTTTGATCATGAATATTTTTGCTTGGTTATCTCTATATCTCCATTACTGTTACAGATAATTAGATTAGATTGCATGACATTATGGTGCTTTGAAAGTCTATCTGAAGTTTGCTTAGCGGGTGCCTTCATACAATTGTTGTCTAAGTCACTGACTGACTGGTCACTGAAAGAAGAAACAAACCATCTGCTTCCAAAAGCAATCCATGCAATAGTCTTTACTGATTAAAAAAAAAGGATAATATTATTGCATATTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197125 lncRNA downstream 17026 475360 ~ 478155 (-) True G173531
TU197130 lncRNA downstream 20202 467719 ~ 474979 (-) True G173536
TU197256 lncRNA downstream 47721 447159 ~ 447460 (-) True G173662
TU197146 lncRNA downstream 48039 445490 ~ 447142 (-) True G173552
TU197255 lncRNA downstream 54724 439850 ~ 440457 (-) True G173661
TU197139 lncRNA upstream 28200 523707 ~ 524014 (-) True G173545
TU197276 lncRNA upstream 80585 576092 ~ 576432 (-) True G173681
TU197112 lncRNA upstream 84597 580104 ~ 580960 (-) True G173518
TU197147 lncRNA upstream 110821 606328 ~ 643213 (-) True G173553
TU197315 lncRNA upstream 349595 845102 ~ 845346 (-) True G173717
CI01000036_00478456_00483759.mRNA mRNA downstream 11422 478197 ~ 483759 (-) True CI01000036_00478456_00483759
CI01000036_00209267_00221982.mRNA mRNA downstream 273199 208772 ~ 221982 (-) True CI01000036_00209267_00221982
CI01000036_00009193_00011238.mRNA mRNA downstream 483943 8445 ~ 11238 (-) True CI01000036_00009193_00011238
CI01000036_00495699_00501488.mRNA mRNA upstream 77 495584 ~ 501488 (-) True CI01000036_00495699_00501488
CI01000036_00501725_00508857.mRNA mRNA upstream 6218 501725 ~ 508857 (-) True CI01000036_00501725_00508857
CI01000036_00510617_00515905.mRNA mRNA upstream 14941 510448 ~ 516005 (-) True CI01000036_00510617_00515905
CI01000036_00519221_00522105.mRNA mRNA upstream 23631 519138 ~ 522203 (-) True CI01000036_00519221_00522105
CI01000036_00529818_00535851.mRNA mRNA upstream 33990 529497 ~ 536037 (-) True CI01000036_00529818_00535851
TU197122 other upstream 463914 959421 ~ 960377 (-) True G173528
TU197623 other upstream 779271 1274778 ~ 1275195 (-) True G174002
TU198043 other upstream 1369427 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 1369427 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 1385003 1880510 ~ 2010840 (-) True G174386

Expression Profile