RNA id: CI01000036_00501725_00508857.mRNA


Basic Information

Item Value
RNA id CI01000036_00501725_00508857.mRNA
length 2074
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000036_00501725_00508857
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 501725 ~ 508857 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGAGATCACTGAGTGTTCCCGCTCTGGGGATCCTAGCCTGGTTATGCTTGTTCTCCTCAGAGCCTGTGCAGGCTGGAAAAATTCTTGTCATGCCAGTGGATGGCAGCCACTGGCTGAGCATGAAGATCCTGGTGGAAGAGCTGTCTCAGAGGGGTCATGAGTTGGTGGTCCTGGTCCCTGAAACCAATGTTCTGATTACGTCTGGCAATTACACCACTAAGTCTTTTCGTGTGCCCTACACCCTTGCTGAGCTGAATGCCAACTTGGACCACATAAAGAAGAGTGCGTTTGAGAAGCCTCCGCAATTGACTGATATCGTTGTGAATTTTGGGAACCTAATACAGTTCACAGATATGCAGGTGAAAGGCTGTGAAGGGCTGCTGTACGACGAGCCCCTGATGAAGAGTCTAAGAGAGACAGGATTTGATGCTTTGCTCACCGATCCTTTCCTGCCGTGTGGCACTATCCTTGCCGATTCTTTCTCACTTCCCGCCATTTACTTCTTGCGTGGAATTCCCTGTCGGCTTGACGAGTCAGCCGCCCAGTGTCCCTCACCTCCATCTTTTGTCCCACGCTTGTTCACCGGTTTCTCAGATAAGATGACTTTCCTTCAGAGAGCAAGTAACACACTTATGGCAGTTTTTGAAAAGTTCCTTTGCCATAAACTTTTTGCCAGCGCTGATGAACTGGTCAGTAGATATCTGCAGAAGGACACTACATACGGAGAGCTATTAGGGCACGGTGCAGTCTGGCTTCTGAGGTATGACTTTACCTTTGAGTTCCCCAAACCTCAAATGCCAAACATGGTCCAAATAGGGGGCATCAACTGTGCAAAGAAGAGTCCACTGACAAAGAGTCACATGTATCTTACTGAGCCTGTGCAGGCTGGAAAGGTACTTGTCATGCCAGTGGATGGCAGCCACTGGCTGAGCATGAAGATCCTGGTGGAAGAACTGTCTCAGAGGGGTCATGAGATGGTGGTCCTGGTCCCTGAAACCAGTGTTCTGATTAGGGCGTCTGGCAATTACATCACTAAGTCTTTTCGTGTGCCCTACACCGATGCTGAGATGAATGCCATCTTGGACCACATAAAGAAGAATGCAATTGAGAAGCCTCCGCAACTGACTGATTTTTTTGAGAATTTGGGGAACCTGATAGAGTTCACAAATATGCAGGTGAAAGCTTGTGAAGGGCTGCTGTACGACGAGCCCCTGATGAAGAGTCTAAGAGAGACGGGATTTGATATTTTGCTCACCGATCCTTTCCTGCCATGTGGCACTATCCTTGCCGAGTCCCTCTCACTTCCCCCTGTTTACTTCTTGCATGGAATTCCCTGTCGGCTTGATGAGTCAGCCGCCCAGTGTCCCTCACCTCCGTCTTTTATCCCGCGTTTCATCACCGGTTACTCAGATAAGATGACTTTCCCTCAGAGAGTAACAAATATGCTTATGACAGTGTTTGAAATGTTCCTTTGCCGTAAACTGTATACTAGCTTTGATGAACTGGCCAGTAGATATCTGCAGAAGGACACTACATATGGAGAGCTATTAGGGCACGGTGCAGTCTGGCTTCATAGGTACGACTTTACCTTTGAGTTCCCCAAACCTCAAATGCCAAACATGGTCCACATAGGGGGCATCAACTGTGCAAAGAGGGCTGAAGCTGGGAAACTGTTGGTTATTCCAACAGATGGCAGTCACTGGTTAGGAATGAAGCCTATTGTGGAGGAGCTGGGGAGGAGAGGAAACCAGGTGGTGGTCGTCATCCCAGAGGCGAGTCTGAGTATGGGTCCATCACAGAATACCACCACTCTGACATTTCCAGTAAACTACACCAAGGCTGAATTAGAAGCAAACTTAGCAGATGAAATTAACACAATTCTGAGTATTGATATCTCTACAGACCTGGCCAAGTTTCAGGCGTTCATCGTCTCACTGGATGTTCTGCAAATGTTTATATTGAGGAATGCTGAGGGTCTACTCTTCAACAAGGACTTGATGAAGAAACTGCAAGACTACAACTTTGATGCTATTCTCACTGACCCGTTTGAGCCAATCGGAGCTATAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197144 lncRNA downstream 6218 495181 ~ 495507 (-) True G173550
TU197125 lncRNA downstream 23570 475360 ~ 478155 (-) True G173531
TU197130 lncRNA downstream 26746 467719 ~ 474979 (-) True G173536
TU197256 lncRNA downstream 54265 447159 ~ 447460 (-) True G173662
TU197146 lncRNA downstream 54583 445490 ~ 447142 (-) True G173552
TU197139 lncRNA upstream 14850 523707 ~ 524014 (-) True G173545
TU197276 lncRNA upstream 67235 576092 ~ 576432 (-) True G173681
TU197112 lncRNA upstream 71247 580104 ~ 580960 (-) True G173518
TU197147 lncRNA upstream 97471 606328 ~ 643213 (-) True G173553
TU197315 lncRNA upstream 336245 845102 ~ 845346 (-) True G173717
CI01000036_00495699_00501488.mRNA mRNA downstream 237 495584 ~ 501488 (-) True CI01000036_00495699_00501488
CI01000036_00478456_00483759.mRNA mRNA downstream 17966 478197 ~ 483759 (-) True CI01000036_00478456_00483759
CI01000036_00209267_00221982.mRNA mRNA downstream 279743 208772 ~ 221982 (-) True CI01000036_00209267_00221982
CI01000036_00009193_00011238.mRNA mRNA downstream 490487 8445 ~ 11238 (-) True CI01000036_00009193_00011238
CI01000036_00510617_00515905.mRNA mRNA upstream 1591 510448 ~ 516005 (-) True CI01000036_00510617_00515905
CI01000036_00519221_00522105.mRNA mRNA upstream 10281 519138 ~ 522203 (-) True CI01000036_00519221_00522105
CI01000036_00529818_00535851.mRNA mRNA upstream 20640 529497 ~ 536037 (-) True CI01000036_00529818_00535851
CI01000036_00547746_00550751.mRNA mRNA upstream 38544 547401 ~ 550864 (-) True CI01000036_00547746_00550751
CI01000036_00553191_00555970.mRNA mRNA upstream 44077 552934 ~ 555970 (-) True CI01000036_00553191_00555970
TU197122 other upstream 450564 959421 ~ 960377 (-) True G173528
TU197623 other upstream 765921 1274778 ~ 1275195 (-) True G174002
TU198043 other upstream 1356077 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 1356077 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 1371653 1880510 ~ 2010840 (-) True G174386

Expression Profile