RNA id: CI01000036_00553191_00555970.mRNA


Basic Information

Item Value
RNA id CI01000036_00553191_00555970.mRNA
length 856
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000036_00553191_00555970
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 552934 ~ 555970 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAGTGGTGAAAGCTTTGGGACCGTCAGCGCTTCTTGTAGTGGGGAGTGAGCTGGCGATGTCAGGGGTCCCAACCCCTCCTCCTCCAGGGGAGATGTCCAGTGGGCCTGTGGCAGAGAGCTGGTGCTATACCCAGGTCAAGGTAGTGAAATTTTCCTACATGTGGACAATAAACAACTTCAGCTTCTGTCGAGAAGAGATGGGTGAAGTTTTGAAGAGCTCTACCTTCTCCTCAGGGCCTAATGATAAGATGAAATGGTGCCTGCGGGTCAATCCGAAGGGACTCGATGATGAAAGTAAAGATTATCTATCGTTATATTTGCTATTAGTTAGTTGTCCAAAAAGTGAAGTCAGAGCCAAGTTCAAATTTTCTTTACTGAACGCTAAACGGGAGGAGACAAAAGCTATGGAAAGCCAAAGAGCCTATCGGTTTGTCCAAGGCAAAGACTGGGGCTTCAAAAAATTTATTAGGAGAGATTTTCTGCTTGATGAAGCAAATGGGCTGCTACCAGATGATAAACTCACGTTATTTTGTGAGGCAAGTATGCATTTACTTCGTAATCTGTTTAGTACCTTAGATTCAAACCTCCATGCATGAAAGTATTGCTTTGGGTCAACCGCACCTGATTAATCATTTTAAAATTTTATTTCCCCTAAAAGCATTTTAGGTGTTACACAATGATAGATTGCTTTGTGCAAATTTTGTCCAGCTTTAAGTTATCCAAGATTCATGCGAAAACTTTTTTGAATGTACATCTATGTTTTCGATTTTTTTTTTAAAATTCAAATGTAAGTGATATATGAATTGAATAATTTAATGGTGTCAGCATTTTTTATTAATATATGTGAAATAAA

Function

GO: NA

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197139 lncRNA downstream 28920 523707 ~ 524014 (-) True G173545
TU197144 lncRNA downstream 57427 495181 ~ 495507 (-) True G173550
TU197125 lncRNA downstream 74779 475360 ~ 478155 (-) True G173531
TU197130 lncRNA downstream 77955 467719 ~ 474979 (-) True G173536
TU197256 lncRNA downstream 105474 447159 ~ 447460 (-) True G173662
TU197276 lncRNA upstream 20122 576092 ~ 576432 (-) True G173681
TU197112 lncRNA upstream 24134 580104 ~ 580960 (-) True G173518
TU197147 lncRNA upstream 50358 606328 ~ 643213 (-) True G173553
TU197315 lncRNA upstream 289132 845102 ~ 845346 (-) True G173717
TU197319 lncRNA upstream 300837 856807 ~ 857074 (-) True G173720
CI01000036_00547746_00550751.mRNA mRNA downstream 2070 547401 ~ 550864 (-) True CI01000036_00547746_00550751
CI01000036_00529818_00535851.mRNA mRNA downstream 16897 529497 ~ 536037 (-) True CI01000036_00529818_00535851
CI01000036_00519221_00522105.mRNA mRNA downstream 30731 519138 ~ 522203 (-) True CI01000036_00519221_00522105
CI01000036_00510617_00515905.mRNA mRNA downstream 36929 510448 ~ 516005 (-) True CI01000036_00510617_00515905
CI01000036_00501725_00508857.mRNA mRNA downstream 44077 501725 ~ 508857 (-) True CI01000036_00501725_00508857
CI01000036_00585386_00663579.mRNA mRNA upstream 29416 585386 ~ 663579 (-) True CI01000036_00585386_00663579
CI01000036_00666753_00752077.mRNA mRNA upstream 110752 666722 ~ 752077 (-) True CI01000036_00666753_00752077
CI01000036_00792090_00794146.mRNA mRNA upstream 236017 791987 ~ 794708 (-) True CI01000036_00792090_00794146
CI01000036_00988998_00991598.mRNA mRNA upstream 433028 988998 ~ 991733 (-) True CI01000036_00988998_00991598
CI01000036_01008391_01018664.mRNA mRNA upstream 452114 1008084 ~ 1019001 (-) False CI01000036_01008391_01018664
TU197122 other upstream 403451 959421 ~ 960377 (-) True G173528
TU197623 other upstream 718808 1274778 ~ 1275195 (-) True G174002
TU198043 other upstream 1308964 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 1308964 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 1324540 1880510 ~ 2010840 (-) True G174386

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073950 True 1479 mRNA 0.48 11 NC_007120.7 10051954 ~ 10068105 (-)