RNA id: CI01000036_00988998_00991598.mRNA


Basic Information

Item Value
RNA id CI01000036_00988998_00991598.mRNA
length 678
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000036_00988998_00991598
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 988998 ~ 991733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTTCGATATTATTTATCATTCTATTTGTATGTAGGCTATGTGTGTAAATAATGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAGTATTCATATAGGTATTTATGTCTTGTGTTTCAGGGACATCACAATGTCAAAGTCAGATCCCCCTCCAAGTTACGAAGAGTCAAGACAGCAGCATGGAAACTATCCATACCCTCCCTACGGATATCCAGCCCAGCCAGGAGTGTACACGGGCCCAGGACAGCCAGGCATACACCCCCAGACAGGGCTGTGGCATGGCCCTGGATACCCCCCTCCAGCAATGCCGTCCTTAATAACACCAGGAATATTTTCCTCCAACCTAAGTTTATCTTATATTAGCCGCCCAGCTGTTAATCACTTCTTCAATCATTGCGGTGTTTACGTTTGTACCCTTACGTTGTCTTACATGACAGGAGCAATATCAAGGTTTGATAAGAGTTTCATCAGTTTCACATACTGCATGTGTTATTTTGACACTAAAGCAGTGTTCTTGGCCCTGGGGATCACAGCAATAGTGTGTGTAATCGTCACAGTCTTCTGTTTTCAGACCAAGGTTGACTTCACCTCCTGTACAGGTCTTCTCTGTGCTCTTTGTGTGGTCGTCCTGGTGACTGGCATCATCACATCCATTGTGCTCTCCTTTCAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197367 lncRNA downstream 42326 946171 ~ 946672 (-) True G173768
TU197149 lncRNA downstream 59632 922755 ~ 929366 (-) True G173555
TU197319 lncRNA downstream 131924 856807 ~ 857074 (-) True G173720
TU197315 lncRNA downstream 143652 845102 ~ 845346 (-) True G173717
TU197147 lncRNA downstream 345785 606328 ~ 643213 (-) True G173553
TU197161 lncRNA upstream 17444 1009177 ~ 1009612 (-) True CI01000036_01008391_01018664
TU197379 lncRNA upstream 18724 1010457 ~ 1010717 (-) True G173780
TU197381 lncRNA upstream 19679 1011412 ~ 1011767 (-) True G173782
TU197619 lncRNA upstream 275433 1267166 ~ 1267686 (-) True G173998
TU197640 lncRNA upstream 310202 1301935 ~ 1302312 (-) True G174014
CI01000036_00792090_00794146.mRNA mRNA downstream 194290 791987 ~ 794708 (-) True CI01000036_00792090_00794146
CI01000036_00666753_00752077.mRNA mRNA downstream 236921 666722 ~ 752077 (-) True CI01000036_00666753_00752077
CI01000036_00585386_00663579.mRNA mRNA downstream 325419 585386 ~ 663579 (-) True CI01000036_00585386_00663579
CI01000036_00553191_00555970.mRNA mRNA downstream 433028 552934 ~ 555970 (-) True CI01000036_00553191_00555970
CI01000036_00547746_00550751.mRNA mRNA downstream 438134 547401 ~ 550864 (-) True CI01000036_00547746_00550751
CI01000036_01008391_01018664.mRNA mRNA upstream 16351 1008084 ~ 1019001 (-) False CI01000036_01008391_01018664
CI01000036_01250575_01252253.mRNA mRNA upstream 258063 1249796 ~ 1252643 (-) True CI01000036_01250575_01252253
CI01000036_01265331_01269187.mRNA mRNA upstream 272991 1264724 ~ 1269211 (-) True CI01000036_01265331_01269187
CI01000036_01396572_01398922.mRNA mRNA upstream 404322 1396055 ~ 1398922 (-) True CI01000036_01396572_01398922
CI01000036_01406109_01409167.mRNA mRNA upstream 414318 1406051 ~ 1409466 (-) True CI01000036_01406109_01409167
TU197122 other downstream 28621 959421 ~ 960377 (-) True G173528
TU197623 other upstream 283045 1274778 ~ 1275195 (-) True G174002
TU198043 other upstream 873201 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 873201 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 888777 1880510 ~ 2010840 (-) True G174386
TU198055 other upstream 1034175 2025908 ~ 2031983 (-) True CI01000036_02022324_02026053

Expression Profile