RNA id: TU197147


Basic Information

Item Value
RNA id TU197147
length 416
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G173553
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 606328 ~ 643213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTTCTCTTTTGAGCCTTGCACTTAAATGTTTAAATTGGCAAGGCTTAAATGAGTTTAGTTTAAACGCAGATAGCAACGTGTGCTGTTCAGATCTCACCTGCGCTCGCGCGCTATCAACGCCCGGGTGATGACGGCGTAAATGACTGGTCATATAGAGCATACGGCACTCGCAGTGAACAAAGTTTAGGGGAAGCCAGAATGCGTATCCATCGACAGAAACATACATTAGCCTAACTCTCTCTGTCTGTTTTATTTATTTTCTACAAACCTTATTATAGATGCGTATGCGTCGTCAGATATGAGATGAACTGCGGTGCAAGTGCGTGTCGAACAGAGTGTGCAGAACGGTACGGTTCGGTTTTTTACCGAGAACCGGTTCACCCCTAATATATATATATATATATATATATATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197112 lncRNA downstream 25368 580104 ~ 580960 (-) True G173518
TU197276 lncRNA downstream 29896 576092 ~ 576432 (-) True G173681
TU197139 lncRNA downstream 82314 523707 ~ 524014 (-) True G173545
TU197144 lncRNA downstream 110821 495181 ~ 495507 (-) True G173550
TU197125 lncRNA downstream 128173 475360 ~ 478155 (-) True G173531
TU197315 lncRNA upstream 201889 845102 ~ 845346 (-) True G173717
TU197319 lncRNA upstream 213594 856807 ~ 857074 (-) True G173720
TU197149 lncRNA upstream 279542 922755 ~ 929366 (-) True G173555
TU197367 lncRNA upstream 302958 946171 ~ 946672 (-) True G173768
TU197161 lncRNA upstream 365964 1009177 ~ 1009612 (-) True CI01000036_01008391_01018664
CI01000036_00553191_00555970.mRNA mRNA downstream 50358 552934 ~ 555970 (-) True CI01000036_00553191_00555970
CI01000036_00547746_00550751.mRNA mRNA downstream 55464 547401 ~ 550864 (-) True CI01000036_00547746_00550751
CI01000036_00529818_00535851.mRNA mRNA downstream 70291 529497 ~ 536037 (-) True CI01000036_00529818_00535851
CI01000036_00519221_00522105.mRNA mRNA downstream 84125 519138 ~ 522203 (-) True CI01000036_00519221_00522105
CI01000036_00510617_00515905.mRNA mRNA downstream 90323 510448 ~ 516005 (-) True CI01000036_00510617_00515905
CI01000036_00666753_00752077.mRNA mRNA upstream 23509 666722 ~ 752077 (-) True CI01000036_00666753_00752077
CI01000036_00792090_00794146.mRNA mRNA upstream 148774 791987 ~ 794708 (-) True CI01000036_00792090_00794146
CI01000036_00988998_00991598.mRNA mRNA upstream 345785 988998 ~ 991733 (-) True CI01000036_00988998_00991598
CI01000036_01008391_01018664.mRNA mRNA upstream 364871 1008084 ~ 1019001 (-) False CI01000036_01008391_01018664
CI01000036_01250575_01252253.mRNA mRNA upstream 606583 1249796 ~ 1252643 (-) True CI01000036_01250575_01252253
TU197122 other upstream 316208 959421 ~ 960377 (-) True G173528
TU197623 other upstream 631565 1274778 ~ 1275195 (-) True G174002
TU198043 other upstream 1221721 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 1221721 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 1237297 1880510 ~ 2010840 (-) True G174386

Expression Profile