RNA id: CI01000036_01396572_01398922.mRNA


Basic Information

Item Value
RNA id CI01000036_01396572_01398922.mRNA
length 1273
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000036_01396572_01398922
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1396055 ~ 1398922 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAACAGGCCTTTCTGTTTGCAAAGAGAAACTCTGATCTTAACGCAGAAACTTTATTAAACCTTGATGGTGGATTGATAAGGCCGAATTTCTATCGGTTCCTTTTTATTGTGGAGACGGGGAGGGATGACAGAGATCCCACAGAAAATCTTCTGAAGGAAAGCAAAAGCTCCTCTTGGACCCCCATCAACACAGGCGTGCAAAAAGGAAGTGGACAAATCCAGCTATGGCAATTTCTCCTGGAGCTGCTGTCTGACAGCGCCAATATGACATGCATCGCCTGGGAGGGGACCAATGGAGAGTTTAAACTGATAGACCCGGACGAGGTGGCCAGACGGTGGGGGGAACGCAAGAGTAAACCGAACATGAACTATGACAAACTGAGCCGAGCTCTGCGCTATTACTACGACAAAAACATCATGACCAAGGTGCACGGAAAGCGCTACGCGTACAAATTTGACTTTAACGGTCTGGCGCAAGTGTGCCAGCCCTCTTCAACTGAACAAGCTATTTATAAGTTCCAGAGCAACTTCGCTCCCCTCCAGTTTTCAGGCATTTCCAAACTCAATCTGGTTGCTCCAGGTGTTGGTCCGTCGGGGTTCTCCTACTGGCCCGGATCTCCTCCCACCCTCTACCACAGCCACAACCTGCAACCGCCAGGACCCTTCGGTGCCGTTTCTGCGTCACATTTAAGTTGCGTTAACAATATCAATAGTTTAAACAACCTGAACAATATCAATAATCACTATAACTGATTTTTAAAATTGGGATCAGAAGTGCGCATCGATACACTAGGTTAATATTAAAAAGCGCAACTAACACATTTCAGTAGCCAACATTGCAATCACACCCCGAGAAAGACCGTCTAATAATTCATAATAGGCCTTAAAATTCTTACTCGATTGAAATTATTATTCGGCATAACATTTTGAGGACTGTTAATGTTGATCACTTTAAGATAAGAAAACAATTTAGCGCCATCTTATGGATAACAAATAACATGGCTAATTCATCATCAATATCAGCTGGGTTGATCAGTTAAAATCAGTTTTGGCTTGCAATATTAACGTAATGTTGGCGAAAAGACTATATGGTACGAGAACAAATGGTAAGAAGCAAAACGTGTTCGCTACTACACTTGTGTAATCGAGCATATGGTTCACACTTATAAAGCGCTTTGATATTTCGTAAATAATTTACGACAGAGACCCATGCACGGTGTAGGTCTGAACATTGGACATACTTTTTCAAAATCGTATATGTCCTAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09437 FEV; ETS oncogene family protein FEV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197654 lncRNA downstream 67390 1328395 ~ 1328665 (-) True G174028
TU197651 lncRNA downstream 73218 1322626 ~ 1322837 (-) True G174025
TU197640 lncRNA downstream 93743 1301935 ~ 1302312 (-) True G174014
TU197619 lncRNA downstream 128369 1267166 ~ 1267686 (-) True G173998
TU197381 lncRNA downstream 384288 1011412 ~ 1011767 (-) True G173782
TU197720 lncRNA upstream 90152 1489074 ~ 1489537 (-) True G174084
TU197727 lncRNA upstream 97897 1496819 ~ 1497055 (-) True G174090
TU197731 lncRNA upstream 104369 1503291 ~ 1503644 (-) True G174092
TU197739 lncRNA upstream 116986 1515908 ~ 1516157 (-) True G174100
TU197741 lncRNA upstream 118129 1517051 ~ 1517420 (-) True G174102
CI01000036_01265331_01269187.mRNA mRNA downstream 126844 1264724 ~ 1269211 (-) True CI01000036_01265331_01269187
CI01000036_01250575_01252253.mRNA mRNA downstream 143412 1249796 ~ 1252643 (-) True CI01000036_01250575_01252253
CI01000036_01008391_01018664.mRNA mRNA downstream 377054 1008084 ~ 1019001 (-) False CI01000036_01008391_01018664
CI01000036_00988998_00991598.mRNA mRNA downstream 404322 988998 ~ 991733 (-) True CI01000036_00988998_00991598
CI01000036_00792090_00794146.mRNA mRNA downstream 601347 791987 ~ 794708 (-) True CI01000036_00792090_00794146
CI01000036_01406109_01409167.mRNA mRNA upstream 7129 1406051 ~ 1409466 (-) True CI01000036_01406109_01409167
CI01000036_01417031_01422737.mRNA mRNA upstream 17965 1416887 ~ 1422737 (-) True CI01000036_01417031_01422737
CI01000036_01428324_01454913.mRNA mRNA upstream 29365 1428287 ~ 1455785 (-) True CI01000036_01428324_01454913
CI01000036_01466321_01474630.mRNA mRNA upstream 66557 1465479 ~ 1474630 (-) True CI01000036_01466321_01474630
CI01000036_01475403_01476425.mRNA mRNA upstream 76481 1475403 ~ 1476691 (-) True CI01000036_01475403_01476425
TU197623 other downstream 120860 1274778 ~ 1275195 (-) True G174002
TU197122 other downstream 435678 959421 ~ 960377 (-) True G173528
TU198043 other upstream 466012 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 466012 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 481588 1880510 ~ 2010840 (-) True G174386
TU198055 other upstream 626986 2025908 ~ 2031983 (-) True CI01000036_02022324_02026053

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073965 False 959 processed_transcript 0.44 2 NC_007120.7 11548772 ~ 11550397 (-)