RNA id: CI01000036_01466321_01474630.mRNA


Basic Information

Item Value
RNA id CI01000036_01466321_01474630.mRNA
length 1744
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000036_01466321_01474630
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1465479 ~ 1474630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTGGATCCCAAGTCCGTGCTGTGTGCTTTCTTTAAGCAAGGCCAATGTACCAAAGGTGATAAGTGTAAATTCTCTCATGACCTCTCGTTGGAGAGGAAATGTGAGAAAAGAAGCGTGTATGTGGACGGCAGAGATGAAGAGCTGGAGAAAGACACCATGGATAATTGGGATGAAAAGAAACTTGAAGAGGTTGTAAACAAGAAGCATGGAGAAGCTGAAAAGAAGAAAGCGAAGACACAAATTGTGTGCAAGTATTTCCTTGATGCTATTGAAAACAACAAATACGGCTGGTTTTGGGTTTGTCCCGGTGGAGGTGACAACTGTATGTACCGCCACGCTCTTCCTGTGGGCTTTGTTCTGAAGAAAGACAAGAAGAAAGAAGAGAAGATTGAGGAGGAGATCTCGTTGGAGGATTTGATAGAGACTGAGCGATCTGCCCTGGGAGCAAACGTCACTCGAATTACTCTTGAAACATTCTTGGCCTGGAAGAAAAGGAAAAGGCAAGAGAAAATGGCTAAAGCAGAGCAGGACATGGAGAGAAAGAAAGCCGACTTCAAAGCTGGCAGAGCGCTTGGAGTGGAGGACTCGGATGAAGTTCATGACCTTGACATTGCTAGATTTATCCCTAAAGAGGTGGATCACGCGGGTATAACGATGGCGTCAGCGGACAGGTTTACTGCCAGAGCCCCTCCTTCAAATGATACAGATGACAATAAATTGAGCGAGGCCTCAGGCGGAGCCATGGAGAACGGAGAACACAGCCCAGACCAGACACTTGAGGACGGTGAAACCAATGATGAAGACGAGACAGAGGCGGTGCCAGTAGACGAGAACCTCTTTACAGGGGAGGACCTAGACGAACTGGAGGAGGAGCTCAACACACTGGACCTGGACGAGTGAAGACTAGGACTGTTGCATTATTCATGAACTACACATGGCTTGAAGTGAATGACAATATTTTCACAAATAACTACCACCAGAATTGCCATGTCAGAAACCGCTCTGCCTGCAATATGCACCCTCATCACTCGAGATGTCCCGGGACGCTAAAGGAGAGACGGGAGTAGGTGTTCTTGTTCTCTCTAAGATTTAACTCTTTGCCCTGTTCCTTTTTTTTTTTTTTTTTTTTTTAAATTGCAGTCTACCCCAAAAGCACAGTCAAGTGAGGGTCTGGTTCTACAGTGGAAACATGCTCCAAATATTTATGAGGCTGTTGATTTGATATTTCTGCGTTCTCTTTTGAAAGATTTGATTAAATGATCATCTTTGTAAGGTCATGCGTATGAAACGATCCAGCATAAATCCTCTTCGAGACGTTCAAGCACTATTGGAATCTGGTTTCCTCTTCTCTGCTGATTAAATGTTGCTTTAATGAAGACAAAGAATCAGTTGATCGGTATCATTACAGTTTTTAACATGTAACCAACTGCATGCCTGTATCAGGATCAGAATGTAAATGCTGAATAAGTGTGATGCTGACGTTCAAGTGTTCAATAATCAGTTGATCAGATTGAGGTGTTGAATGTGAAATCTCTCGGATACAGATGTGGCATCTTTGCCTTATAGAAGGAGATGTGGAAGACGACATCATTACTAGTCAAATATGATGTTTAAAGTGTTTTCAGGAAGTGAGAAAGTGACAGAGATGAGCTTGTGAGATGAACTAGTAATGTCTGTCGTTTTTCTATTCAATTGTTTTAAACTGCCCTCCCACCAACACAACACAAGAAATTGTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197654 lncRNA downstream 136814 1328395 ~ 1328665 (-) True G174028
TU197651 lncRNA downstream 142642 1322626 ~ 1322837 (-) True G174025
TU197640 lncRNA downstream 163167 1301935 ~ 1302312 (-) True G174014
TU197619 lncRNA downstream 197793 1267166 ~ 1267686 (-) True G173998
TU197381 lncRNA downstream 453712 1011412 ~ 1011767 (-) True G173782
TU197720 lncRNA upstream 14444 1489074 ~ 1489537 (-) True G174084
TU197727 lncRNA upstream 22189 1496819 ~ 1497055 (-) True G174090
TU197731 lncRNA upstream 28661 1503291 ~ 1503644 (-) True G174092
TU197739 lncRNA upstream 41278 1515908 ~ 1516157 (-) True G174100
TU197741 lncRNA upstream 42421 1517051 ~ 1517420 (-) True G174102
CI01000036_01428324_01454913.mRNA mRNA downstream 9694 1428287 ~ 1455785 (-) True CI01000036_01428324_01454913
CI01000036_01417031_01422737.mRNA mRNA downstream 42742 1416887 ~ 1422737 (-) True CI01000036_01417031_01422737
CI01000036_01406109_01409167.mRNA mRNA downstream 56013 1406051 ~ 1409466 (-) True CI01000036_01406109_01409167
CI01000036_01396572_01398922.mRNA mRNA downstream 66557 1396055 ~ 1398922 (-) True CI01000036_01396572_01398922
CI01000036_01265331_01269187.mRNA mRNA downstream 196268 1264724 ~ 1269211 (-) True CI01000036_01265331_01269187
CI01000036_01475403_01476425.mRNA mRNA upstream 773 1475403 ~ 1476691 (-) True CI01000036_01475403_01476425
CI01000036_01611248_01620780.mRNA mRNA upstream 136489 1611119 ~ 1621389 (-) True CI01000036_01611248_01620780
CI01000036_01763171_01765280.mRNA mRNA upstream 287845 1762475 ~ 1765385 (-) True CI01000036_01763171_01765280
CI01000036_01782319_01786637.mRNA mRNA upstream 307331 1781961 ~ 1786637 (-) True CI01000036_01782319_01786637
CI01000036_01839255_01848818.mRNA mRNA upstream 362519 1837149 ~ 1848818 (-) True CI01000036_01839255_01848818
TU197623 other downstream 190284 1274778 ~ 1275195 (-) True G174002
TU197122 other downstream 505102 959421 ~ 960377 (-) True G173528
TU198043 other upstream 390304 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 390304 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 405880 1880510 ~ 2010840 (-) True G174386
TU198055 other upstream 551278 2025908 ~ 2031983 (-) True CI01000036_02022324_02026053

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073977 True 2379 mRNA 0.44 10 NC_007120.7 11664797 ~ 11676491 (-)