RNA id: CI01000036_01782319_01786637.mRNA


Basic Information

Item Value
RNA id CI01000036_01782319_01786637.mRNA
length 1452
RNA type mRNA
GC content 0.44
exon number 8
gene id CI01000036_01782319_01786637
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1781961 ~ 1786637 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTAATACACAATAAGCAGCTGGTTTCACAGTTTACTGAGGTCAAAAAGTGCTCATTATGGCGTGACAGTAATGAAATACAGCAGAGTAATAAAGGCAAGGCTGCCACTGACTGGTACAAGTTGCAGAGAGCAAGCTGTTTGCATTCTTTTATGATCAGACAGCTTCATCAACACCTCAACTTTATCTCGCTCCTTGATAATAGACTCTTTCCCAGGCAAGAATTCAGTGTGGCACGCAGTTCAGAGCTATTGAAGATGATATACCTTGTCAAAATGAATGAAAGTATTGAACCAATGACACTTGGGTCCCCTACTTCCCCCAAGCCTGGGGCTCAGTTTTTACCTGGGTTTCTGATGGGAGACCTGCCTGCTCCTGTCACACCTCAACCTAGGTCTTTTGGGTTGACAGGAGGTGGGTCTCCGCCACAGCCGGTGGTCCCAACACCTAAAGACAAGAGTGGAGCCCCTCCAGTCAGAAGCATCTACGATGACCTCAACGGCTCCTGTGTTGGAATGTCACCTCTTGCTGCTCGCAAACAACCATTTTCTGGAGTGCACACACCATTGTCTGGTCTACCAGGGACACCAGGAACGGTCTCTAATTTGTTTAGCCCCGCGGGTCAGCAGAGGAAAACAACGCTTTCCCCAGCTCAAGTAGATCCGTTCTTCACACAAGGAGATGCTCTGTCCTCTGACGACCAGCTAGATGACACCTGGGTCACAGTGTTTGGCTTCCCTCCAGCATCGGCTTCATACATCCTTTTACAGTTTGCACAGTATGGAAACATATTAAAACATGTAATGTCTAATTCAGGAAACTGGATGCATGTCCAGTATCAGTCTAAACTGCAGGCACGGAAAGCTCTCAGTAAAGATGGAAAGATATTTGGAGAAGCCATAATGATTGGTGTCAAACCATGTATCGATAAGAGTGTAATGGAGAGCTCAGACAAGGGCAGTACTTCCATTTCTGTGTTCACGCCCCCAGTGAAGGCTCACGGCACCCCCAGTCACCCTGTATCAACTCCCCGATCTGTCATGAGACCCCTCAGTGCCGCTTACAAAGCATCCAGCAGTGACTATCAGGTATAGTTGAACAAATTCATTAATATAAAACTATCAAAAGCAGCTTTTAAAATAAATGAATAAATGCATTTAAAGGGATAGTTCACCCATAAATGAAAATTATCCAATGATTTACTAACCCTCAAGCCATCCTAGGTGTATACGACTATCTTCTCTCAGACGAACACAATCGGAGATATATTTATGTATATATATTTAGTTTGGCTTGAGGGTGAGTAAATCATGGGATAATTTTCATTTTTGGGTGAGCTATCCTTTTAATGATGTCAGTATTTTGTGTAAAGAGGAGCAGTTTATCGCATTTGGGAGCAAAAGATTACGTTATAAAACTACTCACAGAAACTCAAAAGTTTACCAAAATAAA

Function

GO:

id name namespace
GO:0005543 phospholipid binding molecular_function

KEGG:

id description
K14313 NUP35, NUP53; nuclear pore complex protein Nup53

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198020 lncRNA downstream 59432 1722151 ~ 1722529 (-) True G174366
TU198019 lncRNA downstream 71752 1709873 ~ 1710209 (-) True G174365
TU198017 lncRNA downstream 105003 1676588 ~ 1676958 (-) True G174363
TU197974 lncRNA downstream 115261 1664202 ~ 1666700 (-) True G174320
TU197973 lncRNA downstream 118474 1653986 ~ 1663487 (-) True G174319
TU198049 lncRNA upstream 77120 1863757 ~ 1864342 (-) False G174388
TU198052 lncRNA upstream 77120 1863757 ~ 1864007 (-) True G174388
CI01000036_01763171_01765280.mRNA mRNA downstream 16576 1762475 ~ 1765385 (-) True CI01000036_01763171_01765280
CI01000036_01611248_01620780.mRNA mRNA downstream 160572 1611119 ~ 1621389 (-) True CI01000036_01611248_01620780
CI01000036_01475403_01476425.mRNA mRNA downstream 305270 1475403 ~ 1476691 (-) True CI01000036_01475403_01476425
CI01000036_01466321_01474630.mRNA mRNA downstream 307331 1465479 ~ 1474630 (-) True CI01000036_01466321_01474630
CI01000036_01428324_01454913.mRNA mRNA downstream 326176 1428287 ~ 1455785 (-) True CI01000036_01428324_01454913
CI01000036_01839255_01848818.mRNA mRNA upstream 50512 1837149 ~ 1848818 (-) True CI01000036_01839255_01848818
CI01000036_01850532_01860056.mRNA mRNA upstream 63824 1850461 ~ 1860056 (-) True CI01000036_01850532_01860056
CI01000036_02022324_02026053.mRNA mRNA upstream 235310 2021947 ~ 2026235 (-) False CI01000036_02022324_02026053
TU197623 other downstream 506766 1274778 ~ 1275195 (-) True G174002
TU197122 other downstream 821584 959421 ~ 960377 (-) True G173528
TU198043 other upstream 78297 1864934 ~ 1871089 (-) False G174386
TU198044 other upstream 78297 1864934 ~ 1875255 (-) False G174386
TU198041 other upstream 93873 1880510 ~ 2010840 (-) True G174386
TU198055 other upstream 239271 2025908 ~ 2031983 (-) True CI01000036_02022324_02026053

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073983 False 1756 mRNA 0.43 9 NC_007120.7 12262702 ~ 12269980 (-)