RNA id: TCONS_00073950


Basic Information

Item Value
RNA id TCONS_00073950
length 1479
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_037660
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10050890 ~ 10068105 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGCGGGAAGACGTACAGCCGCGGGAACGTGTTGTGCGCGTTGATGTGTGGTCACGCTCCTGGGTTTTCGCTTCCTTCATTGGCAGGATAAGCAGCACACACTGCAAGCTACTGTGATGGGCTGTTTTTGAAAAGACACAGATACACTTCAGTCTTAAATAGTGCCGATTTAACTTAGCACATCCACAAGGACCGTCCGAACCTTGACTTTAACATTATTGACAGAATGGCGAGGAAAGGTTAAGTGGTGAACGCTTTGGGAAAGTCAGCGCTTCTGATAGTAGGGAGAGAGCTGGTGATGTCGGGGGTCCCAACCCCTCCTCCTCCAGGGGAGATGTCCAGCGGGCCTGTGGCTGAGAGCTGGTGCTATACCCAGGTCAAGGTAGTGAAATTTTCCTACATGTGGACCATAAACAACTTCAGCTTCTGTCGAGAAGAGATGGGTGAAGTATTGAAGAGCTCTACCTTCTCCTCAGGGCCTAATGATAAGATGAAATGGTGCCTGCGGGTCAATCCTAAGGGACTTGATGATGAAAGTAAAGATTATCTATCACTGTATTTGCTACTAGTTAGCTGTCCAAAAAGTGAAGTCAGAGCCAAGTTCAAATTTTCTTTACTGAACGCTAAACGAGAGGAGACGAAAGCTATGGAAAGCCAAAGAGCCTATCGCTTTGTCCAAGGCAAAGACTGGGGCTTCAAAAAATTTATTAGGAGAGATTTTCTGCTTGATGAAGCAAATGGGCTGCTACCAGATGATAAACTCACGTTATTTTGTGAGGTAAGTGTTGTTCAAGACTCTGTGAACATCTCCGGACAGTCCAACATGAACATGTTAAAGGTCCCGGAGTGCCAGCTGTCTGATGATCTGGGGAACCTGTGGGAATGTTCACGCTTCACAGACTGCTCTCTATATGTGGGGGGGCAGGAGTTCAAAGCCCACAAATCTATCCTGGCAGCGAGATCTCCTGTCTTTAATGCCATGTTTGAACATGAAATGGAGGAGAGTAAAAAGaATCGAGTGGATATCAGTGATGTTGAACCAGAGGTTTTTAAAGAAATGATGGGCTTCATATACACCGGAAAAGCACCAAATTTAGAGAAAATGGCTGATAGTTTATTAGCCGCAGCTGATAAATACGCTCTGGAGCGCTTAAAGGTCATGTGTGAGGAAGCCCTTTGCAACAGCCTCTCGGTGGAGAACGTCGCAGACACCCTCATCCTCGCCGACTTGCACAGCGCCGAGCAGCTCAAAGCACAGGCCATAGATTTTATCAACAGGTGCAGTGTCCTCCGACAGCTGGGCTGTAAAGATGGGAAAAACTGGAATAGCAATCATGCCACGGACATAATGGAGACCGCGGGCTGGAAGTCAATGATCCAGTCTCATCCTCACTTAGTGGCGGAGGCCTTCCGTGCCCTGGCATCGGCGCAGTGTCCCCACTTCGGCCTGCCCAGGAAACGCCTAAAACAGTCATGA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-3 Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of protein ubiquitination; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of proteolysis. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOPL (speckle type BTB/POZ protein like).

Ensembl:

ensembl_id ENSDART00000162818

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 681088 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 762884 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 762894 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 762915 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 1001439 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 300275 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 1486971 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 1489101 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 1503207 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 1503207 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073948 mRNA downstream 48172 10002677 ~ 10003782 (-) True XLOC_037659
TCONS_00073944 mRNA downstream 48243 9970274 ~ 10003711 (-) False XLOC_037659
TCONS_00073951 mRNA upstream 70091 10138196 ~ 10145795 (-) False XLOC_037661
TCONS_00073952 mRNA upstream 70095 10138200 ~ 10145880 (-) True XLOC_037661
TCONS_00073953 mRNA upstream 84715 10152820 ~ 10460087 (-) False XLOC_037662
TCONS_00073954 mRNA upstream 84715 10152820 ~ 10532591 (-) False XLOC_037662
TCONS_00073955 mRNA upstream 89277 10157382 ~ 10357638 (-) True XLOC_037662
TCONS_00073935 other downstream 246635 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other downstream 246635 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073901 other downstream 2396653 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 2512931 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 3334153 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073961 other upstream 777813 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 1480667 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 1483499 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073973 other upstream 1503868 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 1754274 11822379 ~ 11855305 (-) True XLOC_037675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_00553191_00555970.mRNA True 856 mRNA 0.39 4 CI01000036 552934 ~ 555970 (-)
bowfin (Amia calva) AMCG00000897 True 3490 mRNA 0.35 9 CM030137.1 8218836 ~ 8232120 (-)