RNA id: TCONS_00073952


Basic Information

Item Value
RNA id TCONS_00073952
length 1038
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_037661
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10138196 ~ 10145880 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGTCTTTAAGGGTGTAGGCGGAGACTCTGTGATGGGCGTGGCtacatttctgtcttcatgtcaTGTGCGGCGGCCCACACATCATCATCACAGGCAGTGTGTGTTAACGGAGAAGAGCACAGGTCATCTATTTCAGCCAGTGGAAACCATGGCAGCTCCATTCAAAACACTTGTGGAAGATTATCCCAGATACCTCAAATCATTCGAGCTCTTTCTTGAGCGCTCATCAGAGCACCAGTGCATGCAGGACTTCATTCATAATACGCTCCCCGACATTCTGGCAAGCATTGGTGGAGGGAGATCTGTTTTCAATGTAATGGGAGTGGGGAGCGGAGCAGGTGATATTGATCTAGAGATGCTAGCACAGCTGCACCTGAAACATCCACATGTCAAAGTCGACAATGAAGTGGTGGAACCAAGTAATGACATGCTCTACAAGTATAAAGCGAGAGTGTCAACATCTCCCGATCTTGCTTATATCAACTTTACATGGAATAAGATGACAGCATCTGAATTTGAAAAACAATGGCAAGAAAAAACACCTGAGAAAAAGATGGACTTCATTCACATGATACAGATGCTGTACTATGTCAAAGATCCAAATGCCACTGTTTCATTTTTTCGAAGTCTGCTTGAAAAAGATGGGAAACTCTTAATTATTCTGGTGTCAGgtgAGAGCGGGTGGGGCAAATTATGGACCACATTTCGAAAGCAGCTCTGTTACACTGAGATGAGCCAGTGTGTCACTACAGGAGAAATAAAGAGCTTTTTAGATTCTGAGGGCATCCCGTACCATAAATATTTGCTTCTGTCCCAGATGGACATCACAGAATGCTTCACTGAAGGAGACCAGGAGGGAGAACTGCTTTTAGATTTCCTAACAGAGGTGAAAGAGTTCAGTAAAAATGCTCCTGAACGTTTGAAGAAAGAAGTGCTTGACGTACTGAGACATCCTGACTGCAGTAAAGAGGTGGACGGCAGGATCATATTCAATAACAACCTTGAAGTCTTAGTCATTGAGCCATagaataaaatc

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0001695 histamine catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046539 histamine N-methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008170 N-methyltransferase activity molecular_function

KEGG:

id description
ko00340 Histidine metabolism
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040801-157 Predicted to enable histamine N-methyltransferase activity. Predicted to be involved in histamine catabolic process and methylation. Predicted to be located in cytoplasm. Is expressed in adaxial cell and muscle pioneer. Human ortholog(s) of this gene implicated in Parkinson's disease; asthma; atopic dermatitis; autosomal recessive non-syndromic intellectual disability; and essential tremor. Orthologous to human HNMT (histamine N-methyltransferase).

Ensembl:

ensembl_id ENSDART00000143295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 767334 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 849130 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 849140 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 849161 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 1087685 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 222500 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 1409196 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 1411326 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 1425432 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 1425432 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073950 mRNA downstream 70095 10051954 ~ 10068105 (-) True XLOC_037660
TCONS_00073949 mRNA downstream 70196 10050890 ~ 10068004 (-) False XLOC_037660
TCONS_00073948 mRNA downstream 134418 10002677 ~ 10003782 (-) True XLOC_037659
TCONS_00073947 mRNA downstream 155504 9981594 ~ 9982696 (-) False XLOC_037659
TCONS_00073946 mRNA downstream 157452 9979707 ~ 9980748 (-) False XLOC_037659
TCONS_00073953 mRNA upstream 6940 10152820 ~ 10460087 (-) False XLOC_037662
TCONS_00073954 mRNA upstream 6940 10152820 ~ 10532591 (-) False XLOC_037662
TCONS_00073955 mRNA upstream 11502 10157382 ~ 10357638 (-) True XLOC_037662
TCONS_00073956 mRNA upstream 612459 10758339 ~ 10769097 (-) True XLOC_037664
TCONS_00073957 mRNA upstream 632347 10778227 ~ 10778615 (-) True XLOC_037665
TCONS_00073935 other downstream 332881 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other downstream 332881 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073901 other downstream 2482899 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 2599177 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 3420399 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073961 other upstream 700038 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 1402892 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 1405724 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073973 other upstream 1426093 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 1676499 11822379 ~ 11855305 (-) True XLOC_037675

Expression Profile

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