RNA id: TCONS_00073955


Basic Information

Item Value
RNA id TCONS_00073955
length 4724
RNA type mRNA
GC content 0.55
exon number 26
gene id XLOC_037662
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10152820 ~ 10532591 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATTGGGGCAGATGCATAGGGGAAGAATGTGGTACCGGCGGGGTACAATCCAGGACAGTGTGGTGCATCCACACAGAAGGCTGGACCACACACCACTCCAACTGTCGGCATTCAGACAAACCCGAGAGCCAGAGGCCTTGCTTTAAAGTATGTGAGTGGCACCAGGACCTCTTTGAATGGGAAGTGTCAGAATGGGGCCCTTGTGTTCTAGCCCCCCTCCTGTCCAACGAGCTCAAACTGCGGACCGCACAGTGCATTACAGCCCAACACGGCATCCAGAGACGGAAGGTCCATTGTGTGCGCACTTCCAACCGCACATCGGTTACAGAAAGGATATGCGATTTCTTTTCACCACGACCAGCTTTCGAGCAGGCCTGCTTGATCCCCTGCCCTCATGACTGCATTGTGTCCGATTTCTCCTCTTGGTCTGGCTGCAGCAGAACATGCGGTGCGGGTCTTCAACATCGAACCCGACATGTCCTAGCAGCGCCAATGTACGGAGGCGCCAACTGCCCCAACCTCACCCAAACAAGGACTTGCTCAAACCTTTTCCCCTGTCCTCTTGGGGAAAGCGAGCATCACTACAGCCTTAAAGTCGGCCTCTGGAGCGAATGCAGGCAGCCACAACACAAAGGGCTTTGGATGAGCGGAAGGACCGTGCTAGACTTCAGCACAGGAGATACCGAAAGAAACACAGTGAAACGACATATTCAGAGCTCCCAGCACCACCATCACCACCTCCaccaacaccaccaccagcacaGTCTCAAGGGTTTAGATGTGGAGATCGGCTATCAAACACGGCAAGTTCGTTGCATGCGCAGCGATGGAAAAAACGCCATGCTGAGCCTTTGTACCCTTGACAACGGCCCTGGCACTTTCCAGTCTTGTGTTATGCCCAGAGACTGCGAGACCTCCGATTGGTCCGTTTGGAGTCcatgttcaaagacatgcagagCATCAGATATGTCGCCTGGTTTTCGGGTCAGGACTCGAAGCATAACGCACACTCCCATTGGTCAAGGCAAAGGATGCCCTGCTCTTGAAGAAAAGGAGGCCTGCAACATCATTGGAGATCTGCTTCCAAACTGCCCAAGGTACGTGTGGAAGAGCACCGATTGGGGGGACTGTCAAGTGGCCCCTCTTCTTAGCCAGCAGGACAGAAGGCTTGACAATGTTAGCGTTCTCTGTGGTGGAGGGATTCAGACCAGGCAGCTGTACTGCGTCCAGGTCCCAGACAATTCCACCCCTCATCATAGAAAAGAGGTGTCTAGGCCTGTAAATGTGCATCTGTGCACAGGAGATCCGCCTTCTGCAGTGCAGCCCTGCTCCATTCCATGCCCACAGCTGTGCCTGCTCTCATCCTGGTCCTCCTGGGGAGCCTGTATCCACGACAACTGCATGGAGACGCATGGACGAAAAGGCTTCAAGCAGAGGAGGAGGGATGTGCTGGAGGAAGGATCTGGAACCGAGAACTGTGCTCATCTCCTGGAGTCAATGCCCTGTGAGGATCCACTGTGCTTCCGGTGGCAGGTGCAGATGGAGAGTGCTTGTGTGCCCAGCAATGGCACCTGCGGGAATGGAACCAGGACACAAACTGTGGCTTGCATCAATTCACAAGGGCAGCTTGTTCCAGAGGAGCTTTGTGAAGAAGAGTCTCCCCCTGCTGAGGTGTCCTGTGTGATGGCCTGTTCTGGTGACTGTGTGCTCAGCTCCTGGTCTCACTGGTCCTCCTGCTCTCACAGCTGCTCCAGCAAAAACTCTGAAGGCCGTCAGAGCCGCATACGCACCATATTAGGCTTGCCAGGAGAAGATAAGACGTGTCCAGCTGCTACTGCTCTGGAGGAGTGGAGAACTTGTAATGATCATCCATGCATCACCTTCTTCTGGGAAGCTTCGCCGTGGGGGCCTTGCATTGAAGACTCCTCTATGAATGTAAATGGCAGCGGCTACTGGAACGGAACGGCCACCTGTGCAGTCGGGCTGCAGATCCGTAAAGTGGCCTGCATGAAAATGGGCGTTGGGCCGGTTATTCCCAAAAGGTGTCCAGAATCTGCCCGTCCAGACACCATTCAGCCCTGTTTACTGCCCTGTGAGAAAGATTGCATTGTGACTCCTTTCAGCGAATGGACAGCCTGCCCGACCACATGCCTGCCAGTGAACAGCAGCGTGGCCTCACAGTCACGATACAGGATCATCATCCAGCGGGCGGCCAATGGAGGTCAAGAGTGTCCCGATACTTTATTTGAAGAGAGGGAATGTGAAGCTCTTCTGCTTTGTCCCACTTACAGATGGAAGACACACAGATGGCATCCGTGTACTCTGGTCCCAGATTCAGTCCAGCAGGGAATGACCGGAGCGAGTGAATCGTGTGGTAAAGGATTAGAGATGAGAGGCGTGAGCTGTGTGAATGAGTATGATGAGATGGTGGCCGTGTCCGAGTGTCTCCAGTGGGCCGGGCCGATGCCGTCTCGCTTCAGGAGCTGTTGGGTGGCATGTAAAGATGACTGTGCCTTTAGTTCCTGGTCGAAATTTTCTGAATGCGCTGGATGTGGGAGCAGACGGACACGCAAACGCACAATTACAGGTGAGAGTCGTAGCCGAAAACTAGACCGATGTCAGCGGGAAGACTTGTTCCCTCTTGTGGAGTCCGAACCCTGTCCGTGTGAGGAGTTTGTTTCTCAGCCATACGGTAATTGGTCGTCTTGTATCCTGTCGGAGACCCCAGCACAGGGTTGGAGGGGTCGTCGAGAGGCACGCGACTGTGGTCAGGGATTCCGCTATCGAGCAATGTCCTGTCTAGACCACGAATCCCACCTGGTCAGCCCAGAACTCTGCAGCGAATCAGGTCTGGTGGAAGAGGTCTGCTACATACCCTGCCCTCTGGACTGCAAGCTGAGCGACTGGTCACCGTGGTCAGCCTGCAGCGCCTCCTGTGGCAGTGGACTGAAAATCAGGTCCAAATGGCTACGAGAGAAGCCTTTCAACGGGGGGAGGCCGTGTCCAAAACTAGACCTCAAGAATCAGGTGTATGAGGCAGTTCCCTGTCGAAGTGAGTGTGATCAGTACGAGTGGCTAACAGACCCATGGTCAGTCTGTACCATCAACACAGTGGATGAGCTGCCAGCCTGTGGAGAGGGAGTCCAGAGCCGCAAGATCTGGTGTGTGAGTCGTGGCAGTGAGGACCTGGTGGCCAGTGTGAATGAGACCCTGTGTGACCAGGATGAAATTCCTCCTCAAGCGCAGACCTGCGTCCTGCCGTGTCCTGACGACTGCGTGATGTCCCAGTGGAGTCAGTGGAGCACCTGTGCCATACCGTGTGACGAAAACAGCTCGAGGACTAGGACAAGGCACGTGCTGCGCCCCCCGGTGGCTGACAGAGTGTGTCCAGAAAATAATCAGACGGAGCCCTGCATCCTCAACAGCACCTGCTTCAATTACCACTACAATGTTTCCAGCTGGAGCACCTGTCAGCTGAGCGAACATGCCATCTGCGGCCAGGGCACGAGGACACGACTCTTAGATTGCATCCGCAGCGATGGCAAAGTGGTGGATTTGAGCGTGTGCGAGGAGTTGGGCCTGCTTCAGCTGTGGAGACTGACCATGAAATGTGTGGTGGACTGTCCCTTTAACTGCATCCTGTCTGACTGGACGTCCTGGACGGAGTGTTCACACACCTGTGGAAGTAAAGGTGTTAAAACTCGCTTTCGCACTGTGCTCCAGCCGGCTCATGAGGAGGGACGTCCCTGCGCCTCCCAGCTGTCCCAAACCAAGCCTTGTCCCATCAGCCCCTGCTACACGTGGCTACTGAGCGACTGGTCTCCCTGCAGAGGAGCTGAATGTGGAGAGGGCACGAGGGAGAGGAACCTGACGTGTGTACAGCACTGGTCAGACTGGCCGGACAGTCCAAACCCTTCTGAAGCCCTCGAGGACGATAAGTGTGGAGACCGACTCCGAAAGCAGAGTGAGCAGGAGCTGCAGCAGCCGTGCTTTGTTCCCTGCCCAGGAGACTGTCACCTGACGGAGTGGTCATTGTGGAGCTCCTGTCAGCTCACGTGTTTGGAGGGTCGCAGTTTCGAGACAGTGGGGCGTCAGGCACGTTCACAAGCTGTTGTCATTCAGGTGCTGGACAATCAGGACAGCTGCCCTCAGCAGGTTTTCGAGACCAGGCCGTGCAAAGGAGGGAAATGTCACAGTTACGAGTGGAGGACCAGTGCCTGGAATGACAACGAGAGATCAGTGTGGTGCCAGCGGTCTGACGGGGTCAATGTGACAGGGGGCTGCTTTCCACAGAACCGGCCAACCACTGTGCGCCACTGTCACCCTCCCTGCACTAAACCCTTCTCCCACTGCAAGCAGAGTGGTGTGTGTGGCTGTGAGAGAGGCTACACTGAAGTGATGACCACACATGGCTTTTTGGACTACTGCACCAAAACCCCAGGCACCGACAACAAGAAGGCCGATGTGAAGACCAGCTCAGGAAGATTAAGACCAGGCACGACTCAAATCCAGGACTTCTTCGGCGAGTGGTCCCTGCAGCCTCTCGGCCCAGATGGAAGAATAAAGCTGTGGGTCTACGGGTTAACAGCTGGAGGATTCATTGTCATATTATTCACAATTGCTGTGGCCTTTCTGTTTTGCAAACCATCCAAACAGAGTAAAAGTGCATCTCCACCACAGAAGCCCTTGACTCTGGCCTATGATGGCGATGTGGACATGTGa

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070621-2 Predicted to be involved in actin cytoskeleton reorganization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human THSD7B (thrombospondin type 1 domain containing 7B).

Ensembl:

ensembl_id ENSDART00000132123

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073926 lncRNA downstream 786516 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 868312 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 868322 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 868343 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 1106867 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00074962 lncRNA upstream 10742 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 1197438 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 1199568 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 1213674 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 1213674 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00073952 mRNA downstream 11502 10138200 ~ 10145880 (-) True XLOC_037661
TCONS_00073951 mRNA downstream 11587 10138196 ~ 10145795 (-) False XLOC_037661
TCONS_00073950 mRNA downstream 89277 10051954 ~ 10068105 (-) True XLOC_037660
TCONS_00073949 mRNA downstream 89378 10050890 ~ 10068004 (-) False XLOC_037660
TCONS_00073948 mRNA downstream 153600 10002677 ~ 10003782 (-) True XLOC_037659
TCONS_00073956 mRNA upstream 400701 10758339 ~ 10769097 (-) True XLOC_037664
TCONS_00073957 mRNA upstream 420589 10778227 ~ 10778615 (-) True XLOC_037665
TCONS_00073959 mRNA upstream 424049 10781687 ~ 10805231 (-) False XLOC_037666
TCONS_00073958 mRNA upstream 424049 10781687 ~ 10805231 (-) False XLOC_037666
TCONS_00073960 mRNA upstream 429641 10787279 ~ 10804796 (-) True XLOC_037666
TCONS_00073935 other downstream 352063 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other downstream 352063 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073901 other downstream 2502081 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 2618359 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 3439581 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073961 other upstream 488280 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 1191134 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 1193966 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073973 other upstream 1214335 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 1464741 11822379 ~ 11855305 (-) True XLOC_037675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_00666753_00752077.mRNA True 3489 mRNA 0.53 13 CI01000036 666722 ~ 752077 (-)