RNA id: TCONS_00073959


Basic Information

Item Value
RNA id TCONS_00073959
length 3344
RNA type mRNA
GC content 0.42
exon number 15
gene id XLOC_037666
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10781687 ~ 10805231 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attaacccaggttactggcaaattaaaagtcctattagcatgcttcggcatataccctactAAAGCACTGGACAGACTTGAGATTTTTCCACTGCATCTTCTTGAAGTGCTTTCTTTTTACTTGACCTTTCTGCTCCACCTGGCCATTTCTCTTCACCCTCGtgtttttaaccatttaaaaatgttactgtGCGAGAGCCACACCAACGGGTGGCGCTAAAACAATAGGATCTCcaatgtgtcaaaataaaatgCGTTAACACGCAATAAACGCGTTTACACGTATTTAACCAGGTCAAGACATACCCTCCGCAGTGTTTGATGTCCACGTTCCACTCGTCATATACACCGCAGGCTGCCCGAGCTCTACCGGGCCAGCCTCTCCACCTTGCAGTCACGTGACACAATTAAAGCGGCTGCTTTGAGTTTGTCAAGGAAGGATCTTCAGATGACTCGACCATGGGCGATCAGTTTGTGCGAGAAGTGCTCAGCTTATGCTTGCAAAGGCTTGCTATTGAAGAAGCTTCTAACTCTGAGCTCGAATTTATTGAGGTGGTGAGAAACTTTGAAGCCGCCAGGAAGAAATGGCTGCATGCAGAGCTGGAGCTGAAGAAACAGAAGGAGCTGCTTGTGAAGTCTGATGTAGCTCGAGCTGCTCTGGAGGTCAAACTCAAACATGCTCGAAACCAGCTGGATGTGGAGATCAAGAAACGCTACAAAGCTGAGGCAGACTATCAATGTCTGGAGCGGCAGATGCAGCTGATATGTGATGTACTGGTGCATGACAGCAAGTCAAATGCCTGTCTGAATGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCATAAAGGAGCCTGTGTCCCGCAACACAGAGGAAAACGGTACTGTGACTCGTttcttcatttaatcctcacttTGCTGGTGCTTTTCTcagtttttaatgtaatttttcctTGTCTTTCCATCAGGTTATCAGTGATAGATGAATCCTCCTTTCTGTCGCACTCTGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAGCACTGCGTTTGTCAAGCCTCTCAAGTCAAGAGCTCGTGAGAGAAGACGTTCATCATTGGGCCCAGTTGTTAGTCTGCCAGTTCCAAAACGGGGAAGAATCAGCGGTCGTTCAGGAGATCTGCTGGTCTCTAGACCACTGGAGAAGGAAATCGAGACGACGGTTGTGAAGGCGTCTGTCAGTACTCCAGAGACTGGAAGTCAGATTCACATGGTAATAGACATAACCCAGGAGGCTCCAGAACATCCATCCAGAGCTCtcagaaatgaacatttttccTCTGTTGCTGAACAAACATCTGTGTGGGCTCACAGTGAAGTCATCCAGGCTGAGACGATGGTTGAAATGGAGGTGAGCGCCGTGGAGCCGGCCGTCCTTCAGGACCTCACGCCCACTGTGGAGAAAACTGTGCAGCATGTGTTCCAGCAGAAAACAGTGATTCGTCCTGAAACATGCTTGCCCTGTGGAAAACGCATTCGGTTTGGAAAGCTAGCTGTAAAATGCCGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACGCCTGTGTCCAGAGAGGTGCAGTCCTAATGCTCATGGTTCATCACACCCCAATGAGGAGACGTTAGAGAGCTTTGCCCCTTCCACACGTCCAAGGATTCCCTCTATCATTGTTCAGTGTGTTCACGAAATTGAGAGACGAGGACTTGAAGAGaaaggCATTTACAGAGTGCCAGGGGGAGAGCGGCAGGTGAAGGAACTGAGGGAGAAGTATCTTTACGGGAAAGGCCCACTGATGCTTCACAAAGTAGATGAGGTTCATGCTGTCTGCGGGCTCCTCAAAGACTTCCTGAGGAAACTCAGTGAGCCTCTCATCACATTTAAGCTTCACAGAACCTTCATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCGTAGAAACGTTATTAAAGACTATCAGAGAGCTGCCGCAGCCTAACAGAGACACCCTGGCCTTCCTAATGCTGCATTTACAGAGggtgaTGCAGAGTCCATTGTGTCAGATGGATCTGAATAACTTATCTAGAGTGTTTGGACCTACAATTATTGGCCACGCAATGTCAGAACCTTCTCCTATGACCATTATGAGAGACACGAACACACAACCCAGAGTAGTAGCTCGCTTACTGTCCTTCCCCTCAGATTTCTGGGAAGGTTTTCTTGCTGAGGAAAATGATCCAGTCAACCCTCCTGTGATCGAGACCAACATCGCTAGTGTCTGTCCAAGCACTAGCAGAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAAACTACATCCGGCGGCTCAATCAAGGGTCGGATAAAGCACTTTGGTGGCACTTTCAATAACCCaAGCAAACCAAGAAATGAACCCGGAAAAAAGAAATTCTTCACATCCCCCAAatgatgcgtttttttttttttttttggtttttgtaaCAAAATGTTACACTGGGACAATTTTCACTTCAGCACTTTATATCGTACCtcagaaaatgtatgaatgcaaGTCTgtccacaaaaaagaaaaaaaataataattaaacttttttcTGTAGAATGTTTCAGTGcatttgtaaatataattatGTATGGGAATGTCCTGCAAACTATCTAAATGTGGCTTAAACACATGGTGAAGAAGTATATTTAATAAAGCAGATGAATTCATGTTCTGTGTagtaatatatatgtttatatatttttttaagaatccATAAATGGGTGGACAGTGTCTGCAGAGGAGCCCTAAGAAGCGTTCATGTGTACCCCATATTGGTGccatcaaataaaatttacaaaaagtATTTTATATGCATAGAAAGCTGTTAAATATAagtgaaaaataattatatttgtgAAGGTTTGAGTGAAAATATCATTTGAGTGAAatcattcagtgtaaagctgcggtcacactggacttgtcTCCCCATAGACTCCATTCATACAAACACGAATACGTCAGCAGCTttacagataattttttttttgtttttttaaatctgacCTGTACTTcttactgtgtgtgtttatatatacacacactatgtATGTAATACAGAATatgtactttgtgtgtgtgtgtgtgtgtatacattgtatttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatatatatatatataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-35 Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000193913

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074962 lncRNA downstream 411062 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073926 lncRNA downstream 1410821 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 1492617 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 1492627 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 1492648 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00073971 lncRNA upstream 749845 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 751975 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 766081 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 766081 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00075300 lncRNA upstream 790756 11595987 ~ 11598944 (-) False XLOC_037673
TCONS_00073957 mRNA downstream 3072 10778227 ~ 10778615 (-) True XLOC_037665
TCONS_00073956 mRNA downstream 12590 10758339 ~ 10769097 (-) True XLOC_037664
TCONS_00073954 mRNA downstream 249096 10152820 ~ 10532591 (-) False XLOC_037662
TCONS_00073953 mRNA downstream 321600 10152820 ~ 10460087 (-) False XLOC_037662
TCONS_00073955 mRNA downstream 424049 10157382 ~ 10357638 (-) True XLOC_037662
TCONS_00073962 mRNA upstream 440731 11245962 ~ 11263228 (-) True XLOC_037668
TCONS_00073963 mRNA upstream 743002 11548233 ~ 11550711 (-) False XLOC_037669
TCONS_00073964 mRNA upstream 743002 11548233 ~ 11551608 (-) False XLOC_037669
TCONS_00073966 mRNA upstream 743658 11548889 ~ 11549379 (-) False XLOC_037669
TCONS_00073968 mRNA upstream 748858 11554089 ~ 11560110 (-) False XLOC_037670
TCONS_00073935 other downstream 976368 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other downstream 976368 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073901 other downstream 3126386 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 3242664 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 4063886 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073961 other upstream 40687 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 743541 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 746373 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073973 other upstream 766742 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 1017148 11822379 ~ 11855305 (-) True XLOC_037675

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_01008391_01018664.mRNA False 2426 mRNA 0.44 14 CI01000036 1008084 ~ 1019001 (-)