RNA id: TCONS_00075300


Basic Information

Item Value
RNA id TCONS_00075300
length 2495
lncRNA type sense_over
GC content 0.35
exon number 2
gene id XLOC_037673
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11595987 ~ 11655031 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttgcatCTTCAGCCGCAGGAGAACGGAGACCGAAACACTGAAGCCTGAGCTCTGCATCTTCACCAGTGCCAACACACCAATGCCACATCCACTGTCGTGTCCTGACTGTAGTGCCCTGACACACTCACTCTGATGTCCTGATGACACACACTACTGCTGCTGTGGACGTTTCTAGTGGATTGAATTAAGACTGTGCCAATTCTTTCCCATCATGCTCCTTTCCTTCTTTAACTGCACTGAGTCTTAAAAGCGGATTTCGTTTTCAGTTGGGCGTAGAGATTAACATCTTTAAAAGTGTTACACGTTGAAATTGTTTACTTTAATTAAggtaaaataatcattaaaacagTACTTTTTAAGCTCTTTTTATTTTGAGGAAAGAGGTGAGTTTTGTACATTTTTAGATGCTGGTTCTGCTTCAGTTTGGGGTTTTTTCTGTTGGATTTTTCCATCTCTTTTCCTTTGCAGATTTTTTCAGCTCCTGAATTTGGACTCTGATTTATTATTTGGGCGTAAGGTGTATAATTTTTGAGAAAATGTTCTTCTGTTTGTCTACTGTACACATTATTTTAGAGCAGGGTTATGTATGTGCTTATTAATAAGTATAAGTAAAAAAGAGAAAGTAATCAACATTTTTGCACAACAGAGCAATAAAAAAAGCAGCAATTATGTACTTTACAAACTTACCACCAACAAAGATTCACTATGAGTTTAAATTCACTGTCAGTTTGAAGATTCTTCTCAGTCAAAACTGAAGAGAAGGTATTTTTATAGACGAAagctactttttattatttttttctcagtatCTCCAACACAGATTTATGGCTTATTTGTAAAATCTCAATTGTGCATTTTTCTTGAAAACTTTCTTGATAAGTTAGCCACTTATTTATGTATGCTGAATATTAAGGGTTTCCTGTGAGAATTGATCAATCTCTTTTACCCAAACAtgtgttaaatacattttgtgtgaAATATCCCTAGTGTTATGAATTGAGAACAGTGCCATTTGATGATTAATCAAGACTAATCATGTATTACTGTGTATATtacatatatgagcaatatcacacgagtagcagtgagGCCAAGtgccccaccagtgacgatatacagccatatcgcactgttactggtgtgatattgcatttatacatcaGTTCGGCGACACAATcttgtaaaaagaaaatcaaacaagtaGGGTCTAAAattccttttgtaagaggaactactttcttccaccattcattcacatctgcagctgacgttaaaaccgcagaagccgttactaattcactaacgtcactttagagctatgtttgaatgattctctagcataaagtctaaagtgatgacaaaacagctgattttactcacattttaagattataaggcttatcattatttaaaataggcaatgtctttataaataaactgcatagaagcaatctaaacaactactttCTTTTccgaaaaagcctcaaaagtacattatgttgtccaacagctgcaatatctgTCAAACTGTAGctagaactgttgtgtgtgtgtatgtatgtatgtatgtatatatatatatatatatatatatatatatatatatgtaaaatacaCTAAATTGTTATGTAAACAATGAATCGTTGATCGACAGCAGTAACTTGTAACTAAAATGGTTTAGCGTTAAACGGTTTGAAATCATGATACTGTAGCTagtaatgccccattcacacattcacacggggcttcagcgtcaacgcttgacttaaggcttgtctgaagttggggctaacgcgatcgtcatagcagcgtcagccaatgaaattcagtcagcaataggccactgtctagctggtgtatttgcatacagagaTCTGATTGGCCAAGGCTTCCATTGGCACTTGAACAGTTGAGCTAGTTTCAACTTCTGTAGCGacaccgacggatccacaatgcaattCGGCAATGCcaccattcaaagtgaatgggaagcgttgacgctgatgccgCTTTTTAAATGACTTCTTCATATAATGAAACAGTTCACCTGATGTTAGTGTTTTCATAGATGCTGTTCATTGTTATGTCTTAATTTGAAccttaaatatagtaaaatacaCTCCCTTAACACTGAAAACAGATTTCTTGTGTTGCTGTGTTTTAGTAATGCTGCTGCCCATATGATTTTACCCATATTGGGTTGCCATAAATATGTTGTCTAAATGAAAATTTGTACACATTTATAATGCAATCAGAATTCTGCATTTTATACAGATAAAGGTATCCAGAATATATCATCTTTTTGTCTGTAAAGTTTGTAAAAATAATAGAACTTAATCATACCAACACAATATGTATTTTTGAGAATCTTCCATGTTTAAAAAAACTTAGATCACCGACTCAACTTTTTACTTTCTTTGACCTTGACATTGTTCAGCAATGTTGTTAATGCTCCTGTAACTCAAATAAACAGATATACTAATGCTCCTGGAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001501 skeletal system development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0017144 drug metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045239 tricarboxylic acid cycle enzyme complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075299 lncRNA downstream 23633 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00075298 lncRNA downstream 23738 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00073972 lncRNA downstream 35648 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00073971 lncRNA downstream 35878 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00074962 lncRNA downstream 1225362 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073976 lncRNA upstream 46285 11645229 ~ 11655031 (-) True XLOC_037673
TCONS_00075301 lncRNA upstream 223435 11822379 ~ 11855293 (-) False XLOC_037675
TCONS_00073979 lncRNA upstream 223435 11822379 ~ 11855305 (-) False XLOC_037675
TCONS_00075302 lncRNA upstream 477899 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00075303 lncRNA upstream 477899 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00073974 mRNA downstream 8917 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073970 mRNA downstream 35555 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073969 mRNA downstream 35560 11554359 ~ 11560427 (-) False XLOC_037670
TCONS_00073968 mRNA downstream 35877 11554089 ~ 11560110 (-) False XLOC_037670
TCONS_00073964 mRNA downstream 44379 11548233 ~ 11551608 (-) False XLOC_037669
TCONS_00073977 mRNA upstream 65853 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073980 mRNA upstream 307826 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073981 mRNA upstream 660525 12259469 ~ 12269966 (-) False XLOC_037678
TCONS_00073982 mRNA upstream 662372 12261316 ~ 12401871 (-) False XLOC_037678
TCONS_00073983 mRNA upstream 663758 12262702 ~ 12269980 (-) False XLOC_037678
TCONS_00073973 other downstream 23932 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 44283 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 45590 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 749438 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073935 other downstream 1790668 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073978 other upstream 223435 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073998 other upstream 983322 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 985699 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 985959 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 1286808 12885752 ~ 12887858 (-) True XLOC_037687

Expression Profile

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