RNA id: TCONS_00073982


Basic Information

Item Value
RNA id TCONS_00073982
length 3205
RNA type mRNA
GC content 0.37
exon number 9
gene id XLOC_037678
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12259469 ~ 12401871 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAACAGTGGGTGGCGATAAAGAGTCCGTCATTTTATAGTGCAGCCTTAAAATCAACAAAGGACTTACTCCATCACAAATGCGACCATTTGAGCTGTGTTTGAAGGTAAAGGTAAAACACCTGCCACTCTGGACTCTTCTAAATGCACATTCCATTCTCACTGAAGCCGTGCAGTTTTCTTGAGAGCAGTGATACTGAAAGCTGACATGTGCTCATCCATCAGTAAAGAGGTATTGAACCAATGACGCTCGGCTCTCCAACCTCTCCTAAGCCTGGGGCTCAGTTTTTACCGGGGTTTCTAATGGGAGACCTGCCTGCTCCTGTCACTCCCCAGCCCAGGTCTTTTGGTTTGACAGGTGGAGCAGAAATCAGGTCTCCTCTTCTTGCTGGTGGGTCTCCTCCACAGCCTGTAGTCCCAACACCTAAAGATAAGAGCGGAGCCCCTCCAGTCAGAAGCATCTATGATGACCTCAATGGCTCTGCTGTGGGAATGTCACCACTTGCTGCTCGCAAACAACCATTTGCTGGAGTTCACACACCATTGTCTGGTCTACAGGGTACACCAGGAACAGTTTCTAACTTTTTTAGTCCCGTGAGTCAGCAGAGGAAAACAACCCTTTCACCAGCTCAAGTAGATCCGTTCTTCACACAAGGAGATGCTCTGTCCTCTGAAGACCAGCTCGATGACACCTGGATCACAGTGTTTGGGTTCCCTCCAGCATCTGCTTCATACATCCTTTTACAGTTTGCACAATATggaaacatattaaaacatgtaATGTCTAATACGGGCAATTGGATGCATGTTCAATATCAGTCAAAACTGCAGGCGAGAAAGGCTCTCAGTAAAGATGGAAAGATATTCGGAGAAGCCATAATGATTGGCGTCAAACCATGTATCGATAAGAGTGTAATGGAGAGCTTGGACAAGGGCAGCACTTCCAGTTCTGTGTTCACACCACCGGTGAAGGCTCCATGCACCCCGAGTCACCCTCTATCAACTCCTCGATCCGTCATGAGACCCCTCAGTGCTGCTTACAAAGCATCCAGCAGTGACTACCAGGTTGTGTCAGATCAACAGACACCAAAAAAGGATGAAAGTTTTGTATCGAAAGCAATGGAGTATATGTTTGGATGGTAATCTTTCACACACAGGGTCCTGACGAAAAAGACCATCAACAGCCTCTTATATGTTGACATTGATTGCTCTAAAACAAACTCATTTTGGGGTTTTCTGGGCACAAGAATTGAGCGAATACACAAGCACTTTATCTCATCGTTTGCGGACTGATTGACTTTGTGTGCTGTTTTCCGGAAGATGGACTCGAGTGTTTTTCACATGGACTGCTTTCAGCTGCTGAGTTTGGAGTTGGTCTTTGCAATCTGTCCTTAAAATCATACAGATTTAACAACTTAATCTTGAGCGTTAAGTGTTTTAGCTCATGCCATAAAGGAGGATCTGCTGGAAATGTAAGGGTCCAAATCATGACAGACTCCCATAATGGACCCTGTTTGTACAACATCAAATTCTTGATTAACGTATTCATTGGTTACACTCTTAATTTATGGCTTTGTGTATAAAACAAGAACTCCTATGGAGGTCATTAATGATGACTTCAGCTTTCTGAGAACAAGGCCTTAAATTAGGATTTAATCATCTTCtgattaagttatatatatatatatatatctgtttttaGGTTGTTGTGGCTTTTCACTGACTTTATTAACTATTTTAATAGAACCAGAAAttcattttttaagaaatgtCTGTTTTTGAAAAATTCTTTCTCTTTAATAAACACTCTCTGACTAGaaactgtagttttttttttttttttttttttttttgagctgatGCAAGTCTTGTTTACAACTGGGCATAATGAGGCTAAAGCAAAACGTTACAAAACTGCTCCTTCAGGGCAGCATTTTTGATTCGAGAATGATGCAATTAAAGTCATAATGTGGAAACGTTGCCATCCTTCAAATTAAAATGAACACCCAAATTCCTGCACTTGCTGATTTGAAAATTTTAATTTGAGTAAGAGGTTGCTTGTAATCTGGAATTtgtaaatgaatgattaatgttttttcacaCCAAAGGCAGACAATTACTGAAACAGTCACAAAAATGTTTTGAGCAAGTCTCTGGTCCTGTTTTGTTGAGTCAGACTGCTGACACAAGTGTTGGTAGACTTGAAGTGAAGCATTTAAAAAAGGAATAACTCTTTAATTACATTGCAAAAAGGTTATACAGTTGTACAATAACACTTTTCAACAATCTCATCTACAGTCACAAATGCAGCTTTATGGCAGTTATTCctattaatagtttttaaaaatccaactgaatttttatttataagcctatttaataaaatgataacATAATCAGACtgatttttaagatgtttttatgcattaactaagaaattaacatcacctacagttgaagtcagaattattaaaccccctttttactttttcccccaatttctgttaacggAGAGATTTATTTTAACACcgttttaataactaatgtctgataactgatttattttgtatttgccatgatgacagtaagtattggactatatatttttcaagacacttctatacagcttaaagtgacattttaaaggctaaattatgttaattaagttaactatacaggttcgggtaattaggcaagtttattgtgtaacagtggtttgttctgtagaaaaaaatagcttaaaggggctaataattttgaccttaaattggttttaaaaaaagaaaacgtaaacttttattctagccgaaataacacaaataagactttctccagaagaaaagtatgatcagacatactgtgaaaatttccttgctctgttaaacttaatttgggaaatatttaaaaaagaaacaatttcaaagggggctaataattctggtttCAGCTGTAAGTTTTATTAAAGCTTTTGCAGTTTTCATGGTGAGTTTAGTTCATTTAATGTCAACTATTTGCTTATTAATAGCTTAATTtcaacaaatttaatataaataagccATTAGATCAATTTTCAGAGTTTTCAAAGTATATGTACTTAATTTCTTAATAATCTTAGTTCActacacaaacaaatatatacaataaaataaccaaaGCAGTTCGAGgtccaatattttaataaaatgacattaaaacatataaactata

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006999 nuclear pore organization biological_process
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0044613 nuclear pore central transport channel cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-9407 Predicted to enable phospholipid binding activity and single-stranded DNA binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in NLS-bearing protein import into nucleus; nuclear pore organization; and regulation of transcription, DNA-templated. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore central transport channel and nuclear pore nuclear basket. Orthologous to human NUP35 (nucleoporin 35).

Ensembl:

ensembl_id ENSDART00000191901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075304 lncRNA downstream 89531 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 89534 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 89541 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074963 lncRNA downstream 89547 12143069 ~ 12171769 (-) False XLOC_037677
TCONS_00073979 lncRNA downstream 406011 11822379 ~ 11855305 (-) False XLOC_037675
TCONS_00074001 lncRNA upstream 188085 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00074006 lncRNA upstream 253434 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074010 lncRNA upstream 325315 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 488027 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 497297 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00073980 mRNA downstream 226872 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073977 mRNA downstream 584825 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073975 mRNA downstream 606285 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073974 mRNA downstream 674246 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073970 mRNA downstream 700884 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073986 mRNA upstream 1418 12403289 ~ 12424231 (-) False XLOC_037679
TCONS_00073987 mRNA upstream 3250 12405121 ~ 12424794 (-) False XLOC_037679
TCONS_00073988 mRNA upstream 3775 12405646 ~ 12424791 (-) True XLOC_037679
TCONS_00073989 mRNA upstream 26355 12428226 ~ 12443726 (-) True XLOC_037680
TCONS_00073990 mRNA upstream 66629 12468500 ~ 12493628 (-) False XLOC_037681
TCONS_00073978 other downstream 406011 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 689261 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 709612 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 710919 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 1414767 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073998 other upstream 180395 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 182772 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 183032 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 483881 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1437871 13839742 ~ 13853399 (-) True XLOC_037696

Expression Profile

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