RNA id: TU208314


Basic Information

Item Value
RNA id TU208314
length 277
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G183438
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 182467 ~ 182743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCCGTAGACGAGGAGTTTCTCAGCAAGTTAGATTCTCTTGTTGGGCTCGTGCTCGTCTTCCGCTGGGTCGTCCTGTCTCCTGCTTTCTCGGTGGTCTCTCCTGCCTGTGTGTCAGCTGTCGTGTGCGCAAGACACAGCGAGAGCCACCAAACAGTTTCCTCAAACTGTCACCAGTTACTTTGACTATTATTTTTGGTGTCTCAGGTTTCACCCTGAATAAACTTGTTCTTTTGTTCACCGCAACTTGAGTCCTCCTTTCATTCACCGTCCGACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208313 lncRNA upstream 63 182128 ~ 182404 (+) True CI01000040_00178642_00181455
TU208293 lncRNA upstream 3543 131782 ~ 178924 (+) False G183419
TU208307 lncRNA upstream 8632 171309 ~ 173835 (+) False G183433
TU208308 lncRNA upstream 8632 171309 ~ 173835 (+) True G183433
TU208292 lncRNA upstream 25173 138368 ~ 157294 (+) True G183419
TU208316 lncRNA downstream 5719 188462 ~ 188747 (+) True G183440
TU208295 lncRNA downstream 18309 201052 ~ 253362 (+) True G183421
TU208291 lncRNA downstream 112114 294857 ~ 313275 (+) True CI01000040_00240852_00305487
TU208332 lncRNA downstream 149676 332419 ~ 332645 (+) True G183456
TU208335 lncRNA downstream 154076 336819 ~ 337033 (+) True G183459
CI01000040_00178642_00181455.mRNA mRNA upstream 276 178604 ~ 182191 (+) False CI01000040_00178642_00181455
CI01000040_00240852_00305487.mRNA mRNA downstream 58109 240852 ~ 305487 (+) False CI01000040_00240852_00305487
CI01000040_00347516_00350540.mRNA mRNA downstream 164773 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00366809_00384965.mRNA mRNA downstream 183966 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00512880_00513451.mRNA mRNA downstream 330137 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00554753_00561571.mRNA mRNA downstream 372010 554753 ~ 562993 (+) True CI01000040_00554753_00561571
TU208294 other upstream 17545 157543 ~ 164922 (+) True G183420
TU208230 other upstream 122070 53691 ~ 60397 (+) True G183366
TU208290 other downstream 14969 197712 ~ 276855 (+) True G183418
TU208979 other downstream 791370 974113 ~ 974246 (+) True G184034
TU208940 other downstream 1047549 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 3150835 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 3556244 3738987 ~ 3739281 (+) True G185884

Expression Profile