RNA id: TU208335


Basic Information

Item Value
RNA id TU208335
length 215
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G183459
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 336819 ~ 337033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGACATGTTACAAGCAGGATAATGTAGAGCCGGACGATTTTTATCGCAAAATAAACCACTTGAGGGTGATACAAGACTCACGTCAGGAGTCTGGCTGTACATTATCCCTTCCTTATTGAACTGACTGAGTGATCATCCAGTTACAATAACATGGAGGCACTGCCTTCTCTGATATGTTTTCATTTCACTTGTATTTCATTGTTTTTGACAAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208332 lncRNA upstream 4174 332419 ~ 332645 (+) True G183456
TU208291 lncRNA upstream 23544 294857 ~ 313275 (+) True CI01000040_00240852_00305487
TU208295 lncRNA upstream 83457 201052 ~ 253362 (+) True G183421
TU208316 lncRNA upstream 148072 188462 ~ 188747 (+) True G183440
TU208314 lncRNA upstream 154076 182467 ~ 182743 (+) True G183438
TU208341 lncRNA downstream 9341 346374 ~ 346914 (+) False G183465
TU208343 lncRNA downstream 9341 346374 ~ 346914 (+) True G183465
TU208500 lncRNA downstream 20400 357433 ~ 357675 (+) True G183603
TU208526 lncRNA downstream 43088 380121 ~ 380449 (+) True G183628
TU208529 lncRNA downstream 43575 380608 ~ 397139 (+) True G183630
CI01000040_00240852_00305487.mRNA mRNA upstream 31332 240852 ~ 305487 (+) False CI01000040_00240852_00305487
CI01000040_00178642_00181455.mRNA mRNA upstream 154628 178604 ~ 182191 (+) False CI01000040_00178642_00181455
CI01000040_00347516_00350540.mRNA mRNA downstream 10483 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00366809_00384965.mRNA mRNA downstream 29676 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00512880_00513451.mRNA mRNA downstream 175847 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00554753_00561571.mRNA mRNA downstream 217720 554753 ~ 562993 (+) True CI01000040_00554753_00561571
CI01000040_00643738_00689792.mRNA mRNA downstream 306705 643738 ~ 689918 (+) True CI01000040_00643738_00689792
TU208290 other upstream 59964 197712 ~ 276855 (+) True G183418
TU208294 other upstream 171897 157543 ~ 164922 (+) True G183420
TU208230 other upstream 276422 53691 ~ 60397 (+) True G183366
TU208979 other downstream 637080 974113 ~ 974246 (+) True G184034
TU208940 other downstream 893259 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2996545 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 3401954 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 3636732 3973765 ~ 3974123 (+) True G185947

Expression Profile