Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003246 |
| length | 4621 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 1 |
| gene id | XLOC_000787 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 56851035 ~ 56857465 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0022402 | cell cycle process | biological_process |
| GO:0098813 | nuclear chromosome segregation | biological_process |
| GO:0072698 | protein localization to microtubule cytoskeleton | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0140014 | mitotic nuclear division | biological_process |
| GO:0006996 | organelle organization | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:1903047 | mitotic cell cycle process | biological_process |
| GO:0006259 | DNA metabolic process | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0044380 | protein localization to cytoskeleton | biological_process |
| GO:0072686 | mitotic spindle | cellular_component |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0005815 | microtubule organizing center | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0044464 | obsolete cell part | cellular_component |
| GO:1905348 | endonuclease complex | cellular_component |
| GO:0015630 | microtubule cytoskeleton | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005623 | obsolete cell | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043228 | non-membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
| GO:1902555 | endoribonuclease complex | cellular_component |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0033204 | ribonuclease P RNA binding | molecular_function |
| GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00001269 | lncRNA | upstream | 17033 | 56830798 ~ 56834002 (+) | True | XLOC_000785 |
| TCONS_00002886 | lncRNA | upstream | 43433 | 56806134 ~ 56807602 (+) | True | XLOC_000781 |
| TCONS_00002885 | lncRNA | upstream | 167401 | 56669158 ~ 56683634 (+) | True | XLOC_000776 |
| TCONS_00003243 | lncRNA | upstream | 188384 | 56660197 ~ 56662651 (+) | False | XLOC_000775 |
| TCONS_00003242 | lncRNA | upstream | 188384 | 56660197 ~ 56662651 (+) | True | XLOC_000775 |
| TCONS_00003247 | lncRNA | downstream | 2820 | 56858475 ~ 56872540 (+) | False | XLOC_000783 |
| TCONS_00003248 | lncRNA | downstream | 2834 | 56858489 ~ 56900288 (+) | False | XLOC_000783 |
| TCONS_00003249 | lncRNA | downstream | 16112 | 56871767 ~ 56872540 (+) | True | XLOC_000783 |
| TCONS_00003250 | lncRNA | downstream | 17442 | 56873097 ~ 56874996 (+) | False | XLOC_000788 |
| TCONS_00003251 | lncRNA | downstream | 23811 | 56879466 ~ 57016780 (+) | False | XLOC_000789 |
| TCONS_00001270 | mRNA | upstream | 5559 | 56843411 ~ 56845476 (+) | True | XLOC_000786 |
| TCONS_00001268 | mRNA | upstream | 23153 | 56823437 ~ 56827882 (+) | True | XLOC_000784 |
| TCONS_00001267 | mRNA | upstream | 34340 | 56813845 ~ 56816695 (+) | True | XLOC_000782 |
| TCONS_00001266 | mRNA | upstream | 45609 | 56801021 ~ 56805426 (+) | True | XLOC_000780 |
| TCONS_00001265 | mRNA | upstream | 64114 | 56779495 ~ 56786921 (+) | True | XLOC_000779 |
| TCONS_00001272 | mRNA | downstream | 4090 | 56859745 ~ 56864253 (+) | False | XLOC_000783 |
| TCONS_00001273 | mRNA | downstream | 17704 | 56873359 ~ 56878634 (+) | True | XLOC_000788 |
| TCONS_00001274 | mRNA | downstream | 30559 | 56886214 ~ 56891758 (+) | False | XLOC_000790 |
| TCONS_00001275 | mRNA | downstream | 30575 | 56886230 ~ 56893355 (+) | True | XLOC_000790 |
| TCONS_00001276 | mRNA | downstream | 44925 | 56900580 ~ 56904810 (+) | True | XLOC_000791 |
| TCONS_00001233 | other | upstream | 1553784 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001221 | other | upstream | 1722456 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001186 | other | upstream | 2664879 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001180 | other | upstream | 2789825 | 54053104 ~ 54061210 (+) | True | XLOC_000705 |
| TCONS_00001166 | other | upstream | 3463154 | 53387765 ~ 53387881 (+) | True | XLOC_000690 |
| TCONS_00001304 | other | downstream | 492243 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001335 | other | downstream | 1304496 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001394 | other | downstream | 2275637 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
