RNA id: TCONS_00001270



Basic Information


Item Value
RNA id TCONS_00001270
length 1227
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_000786
representative True

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56843411 ~ 56845476 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTCTGTGTTCAGAAGTGGTCAATCCTGCAGTTATCGCTTTTGGTAGCGTTGCGTGACGTTATATGGGTTTCTGGTGCTGACTGGGTTGTGAATTACAAATCTTTACACATCTGTGCACTGAAGAACTCATCAGTGATAATCAGCTGCACTTATAAATACCCTAATGGACATCAGATCATGAAAGTGTACTGGACCAAAAACCCTGTAAAGGATGTAGAGCCTCCAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAAAAGCAGAACTGCACCATCAGACTGAGTCATGTGACAAAGAAAGTTGAACATGAGTACTGTTTTAGATTTACTACTGATAAAGATGGGAAATGGCTTGGCTCTCCAGGAGTGATTCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGCTCAGTCAGAAGAGAAGACGCAGGCAGATATAGATGTGCTGTACAtggacacacactcacatcacCTGACGTCTATCTCAATGTCACCTATCCTCCAAAGAGCGTCTCAGTGTCCATCAGTGGGTCTGCTGTAATAATGTCTGGAGATTCAGTGGctctgagctgcagcagtgactcaaaccctcctgcagaAATCAACTGGTTTAAAGGAGAAACATCAGTAAGATCTGGAAGAATCTTCAGCATCTCCAAGATCAGCTCTGatgacagtggagaatacaagtgTAGAGCCAGAAATGACCATGGAGTGAAATACTCTGATCCTGTGACTTTAGATGttcagtACCCACCCAAGAGCATCTCAGTGTCCGTCACTGATTCTGGTCAGCTTTTTTCTGATTCAGTGAGTCTGATGTGCATCAGTGACTCAAACTCTCCTGCTCTGAACTTCAGCTGGTTTAAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCATCACTGTCACTGTTCATCAGCATGCTGAgagaaacatcatcatcatcacagcgACATCTGGAGGAttattcatcttcatcatcatcctgtGTTTAATG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152312

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00001269 lncRNA upstream 9409 56830798 ~ 56834002 (+) True XLOC_000785
TCONS_00002886 lncRNA upstream 35809 56806134 ~ 56807602 (+) True XLOC_000781
TCONS_00002885 lncRNA upstream 159777 56669158 ~ 56683634 (+) True XLOC_000776
TCONS_00003243 lncRNA upstream 180760 56660197 ~ 56662651 (+) False XLOC_000775
TCONS_00003242 lncRNA upstream 180760 56660197 ~ 56662651 (+) True XLOC_000775
TCONS_00003246 lncRNA downstream 5559 56851035 ~ 56855655 (+) False XLOC_000787
TCONS_00003247 lncRNA downstream 12999 56858475 ~ 56872540 (+) False XLOC_000783
TCONS_00003248 lncRNA downstream 13013 56858489 ~ 56900288 (+) False XLOC_000783
TCONS_00003249 lncRNA downstream 26291 56871767 ~ 56872540 (+) True XLOC_000783
TCONS_00003250 lncRNA downstream 27621 56873097 ~ 56874996 (+) False XLOC_000788
TCONS_00001268 mRNA upstream 15529 56823437 ~ 56827882 (+) True XLOC_000784
TCONS_00001267 mRNA upstream 26716 56813845 ~ 56816695 (+) True XLOC_000782
TCONS_00001266 mRNA upstream 37985 56801021 ~ 56805426 (+) True XLOC_000780
TCONS_00001265 mRNA upstream 56490 56779495 ~ 56786921 (+) True XLOC_000779
TCONS_00001264 mRNA upstream 74084 56768263 ~ 56769327 (+) True XLOC_000778
TCONS_00001271 mRNA downstream 6924 56852400 ~ 56857465 (+) True XLOC_000787
TCONS_00001272 mRNA downstream 14269 56859745 ~ 56864253 (+) False XLOC_000783
TCONS_00001273 mRNA downstream 27883 56873359 ~ 56878634 (+) True XLOC_000788
TCONS_00001274 mRNA downstream 40738 56886214 ~ 56891758 (+) False XLOC_000790
TCONS_00001275 mRNA downstream 40754 56886230 ~ 56893355 (+) True XLOC_000790
TCONS_00001233 other upstream 1546160 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1714832 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2657255 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2782201 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3455530 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 502422 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1314675 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2285816 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile


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