RNA id: TCONS_00001271


Basic Information

Item Value
RNA id TCONS_00001271
length 1106
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_000787
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56851035 ~ 56857465 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTGCATCTCTTTACACACTCAGTCCATCAGTCGCTGTTGATCCTCTGCTCTTCAACACGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGGTTTCTGCTGCTGAATGGAGTACGAAATACAATGCTACAGAAATCTGTGCCCTACAGAACTCAACAATGACAATCAGCTGCACTTTTACACACCCTGAGGGATTGCAGATCATGAGAGCCTTCTGGAACAAAAACGAGGTAAAACATGATGGAGAGCTTACAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCACAACCGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACACGAGTATTATTTCAGAATTACTACTAATGTATCAGCTCAAAAATGGCTTGGTAAACCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAAAAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAACAGAAGCAGGACACTACAGCTGTGGTGTGCAGGGACAAATGTACATCTCTCCTGCTGTTTATCTCGATGTCACATATGCTCCAGATACTCCTGTGATCTTCCTCAGTGGATCTGCTATAATAAAGGagggagattcagtgactctgatGTGCATCAGTCACTCAAATCCTCCTGCTCTGAACTTCAGCTGGTTTGAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCGTCACTGTCACTGGTGAAGCTTTTATCATCACACTCCTGTAACTTCATCAGTCTGGAGAGTTAATCATGATCTGCTTCATCTTTCAGTTTATCAAGGCACTGGgagaaacatcatcatcattatcacaGCAACATTTGGAGGAttattcatcatcat

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0044464 obsolete cell part cellular_component
GO:1905348 endonuclease complex cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:1902555 endoribonuclease complex cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0033204 ribonuclease P RNA binding molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000152825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001269 lncRNA upstream 18398 56830798 ~ 56834002 (+) True XLOC_000785
TCONS_00002886 lncRNA upstream 44798 56806134 ~ 56807602 (+) True XLOC_000781
TCONS_00002885 lncRNA upstream 168766 56669158 ~ 56683634 (+) True XLOC_000776
TCONS_00003243 lncRNA upstream 189749 56660197 ~ 56662651 (+) False XLOC_000775
TCONS_00003247 lncRNA downstream 1010 56858475 ~ 56872540 (+) False XLOC_000783
TCONS_00003248 lncRNA downstream 1024 56858489 ~ 56900288 (+) False XLOC_000783
TCONS_00003249 lncRNA downstream 14302 56871767 ~ 56872540 (+) True XLOC_000783
TCONS_00003250 lncRNA downstream 15632 56873097 ~ 56874996 (+) False XLOC_000788
TCONS_00003251 lncRNA downstream 22001 56879466 ~ 57016780 (+) False XLOC_000789
TCONS_00001270 mRNA upstream 6924 56843411 ~ 56845476 (+) True XLOC_000786
TCONS_00001268 mRNA upstream 24518 56823437 ~ 56827882 (+) True XLOC_000784
TCONS_00001267 mRNA upstream 35705 56813845 ~ 56816695 (+) True XLOC_000782
TCONS_00001266 mRNA upstream 46974 56801021 ~ 56805426 (+) True XLOC_000780
TCONS_00001265 mRNA upstream 65479 56779495 ~ 56786921 (+) True XLOC_000779
TCONS_00001272 mRNA downstream 2280 56859745 ~ 56864253 (+) False XLOC_000783
TCONS_00001273 mRNA downstream 15894 56873359 ~ 56878634 (+) True XLOC_000788
TCONS_00001274 mRNA downstream 28749 56886214 ~ 56891758 (+) False XLOC_000790
TCONS_00001275 mRNA downstream 28765 56886230 ~ 56893355 (+) True XLOC_000790
TCONS_00001276 mRNA downstream 43115 56900580 ~ 56904810 (+) True XLOC_000791
TCONS_00001233 other upstream 1555149 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1723821 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2666244 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2791190 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3464519 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 490433 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1302686 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2273827 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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