RNA id: TCONS_00001272


Basic Information

Item Value
RNA id TCONS_00001272
length 974
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_000783
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56819153 ~ 56900288 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTGCATCTCTTTACACACTCAGTCCATCAGTCGCTGTTGATCGGCTGCTCTTCAACACGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGGTTTCTGCTGCTGATTGGGGTATGAAATACAATGCTACAGAAATATGTGCACTACAGAACTCAACAATGACAATCAGCTGCACTTTTATATACCCTGATGGATTGCAGATAAAGAGAGCCTTCTGGAACAAAAACGACGTGAAACATGATGGAGAGCTTGCAGATCTGTCTGAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCACAACCGCACTGTCAGACTGAGTCATGTGACAAAGAAAGATGAACATGACTATTATTTCAGAATCATTACTGATGTAACAAAGGAAAAATGGATTGGCATTCCAGGAGTGCGTCTCTCTGTCACAGatcTTCAGCTGAAGTCTCCTGGGAGTGTAAAAGAGCGAGATTCAGTCCGTCTGACATGTAGAAGCAGCTGTGAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTAATATTGGAGATGAACTCAACATCAGGTCAGTCAGTAGAACAGACGCAGGACACTACAGCTGTGGTGTGCAGGGACAAACGTACATCTCTCCTGCTGTTTATCTCAATGTCACATATGCTCCAGATACTCCTGTGATCTCCATCAGTGGATCTGCTGTAATAAAGGAaaatgattcagtgactctgaactgcagcagtgactcaaaccctcctgcagaAATCAGCTGGTTTAAAGCAAATACATATCTGAGTTCTGGAAGAATCTTCAGCATCTCCAAGATCAGCTTTAatgacagtggagaatacaagtgTAGAGCCACAAATGAACATGGAGAGAAATACTCTGATCCTGTGACTTTAGATGttcagt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0006508 proteolysis biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000152291

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003246 lncRNA upstream 4090 56851035 ~ 56855655 (+) False XLOC_000787
TCONS_00001269 lncRNA upstream 25743 56830798 ~ 56834002 (+) True XLOC_000785
TCONS_00002886 lncRNA upstream 52143 56806134 ~ 56807602 (+) True XLOC_000781
TCONS_00002885 lncRNA upstream 176111 56669158 ~ 56683634 (+) True XLOC_000776
TCONS_00003243 lncRNA upstream 197094 56660197 ~ 56662651 (+) False XLOC_000775
TCONS_00003249 lncRNA downstream 7514 56871767 ~ 56872540 (+) True XLOC_000783
TCONS_00003250 lncRNA downstream 8844 56873097 ~ 56874996 (+) False XLOC_000788
TCONS_00003251 lncRNA downstream 15213 56879466 ~ 57016780 (+) False XLOC_000789
TCONS_00003252 lncRNA downstream 75094 56939347 ~ 56944389 (+) False XLOC_000794
TCONS_00003253 lncRNA downstream 75126 56939379 ~ 56944389 (+) True XLOC_000794
TCONS_00001271 mRNA upstream 2280 56852400 ~ 56857465 (+) True XLOC_000787
TCONS_00001270 mRNA upstream 14269 56843411 ~ 56845476 (+) True XLOC_000786
TCONS_00001268 mRNA upstream 31863 56823437 ~ 56827882 (+) True XLOC_000784
TCONS_00001267 mRNA upstream 43050 56813845 ~ 56816695 (+) True XLOC_000782
TCONS_00001266 mRNA upstream 54319 56801021 ~ 56805426 (+) True XLOC_000780
TCONS_00001273 mRNA downstream 9106 56873359 ~ 56878634 (+) True XLOC_000788
TCONS_00001274 mRNA downstream 21961 56886214 ~ 56891758 (+) False XLOC_000790
TCONS_00001275 mRNA downstream 21977 56886230 ~ 56893355 (+) True XLOC_000790
TCONS_00001276 mRNA downstream 36327 56900580 ~ 56904810 (+) True XLOC_000791
TCONS_00001277 mRNA downstream 55489 56919742 ~ 56922160 (+) True XLOC_000792
TCONS_00001233 other upstream 1562494 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 1731166 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 2673589 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 2798535 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 3471864 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 483645 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 1295898 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 2267039 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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