Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU261857 |
| length | 640 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G230711 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 2545634 ~ 2546398 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU261934 | lncRNA | upstream | 52506 | 2492896 ~ 2493128 (+) | True | G230783 |
| TU261933 | lncRNA | upstream | 52819 | 2492563 ~ 2492815 (+) | True | G230782 |
| TU261932 | lncRNA | upstream | 58378 | 2487023 ~ 2487256 (+) | True | G230781 |
| TU261931 | lncRNA | upstream | 58937 | 2486432 ~ 2486697 (+) | True | G230780 |
| TU261930 | lncRNA | upstream | 63266 | 2482131 ~ 2482368 (+) | True | G230779 |
| TU261949 | lncRNA | downstream | 34898 | 2581296 ~ 2581522 (+) | True | G230798 |
| TU261856 | lncRNA | downstream | 36013 | 2582411 ~ 2583773 (+) | True | G230710 |
| TU261953 | lncRNA | downstream | 40517 | 2586915 ~ 2587138 (+) | True | G230802 |
| TU261963 | lncRNA | downstream | 64998 | 2611396 ~ 2612378 (+) | True | G230812 |
| TU261853 | lncRNA | downstream | 86893 | 2633291 ~ 2689215 (+) | True | G230707 |
| CI01000054_02500503_02511195.mRNA | mRNA | upstream | 34439 | 2500503 ~ 2511195 (+) | True | CI01000054_02500503_02511195 |
| CI01000054_02417068_02430580.mRNA | mRNA | upstream | 114318 | 2417068 ~ 2431316 (+) | True | CI01000054_02417068_02430580 |
| CI01000054_02289802_02330591.mRNA | mRNA | upstream | 214653 | 2289802 ~ 2330981 (+) | False | CI01000054_02289802_02330591 |
| CI01000054_02272856_02274337.mRNA | mRNA | upstream | 271109 | 2271189 ~ 2274525 (+) | False | CI01000054_02272856_02274337 |
| CI01000054_02239241_02261796.mRNA | mRNA | upstream | 283776 | 2238324 ~ 2261858 (+) | False | CI01000054_02239241_02261796 |
| CI01000054_02564258_02570248.mRNA | mRNA | downstream | 17294 | 2563692 ~ 2570405 (+) | True | CI01000054_02564258_02570248 |
| CI01000054_02589793_02592201.mRNA | mRNA | downstream | 43395 | 2589793 ~ 2592926 (+) | True | CI01000054_02589793_02592201 |
| CI01000054_02613166_02614884.mRNA | mRNA | downstream | 66660 | 2613058 ~ 2615458 (+) | True | CI01000054_02613166_02614884 |
| CI01000054_02652696_02685815.mRNA | mRNA | downstream | 106298 | 2652696 ~ 2685833 (+) | True | CI01000054_02652696_02685815 |
| CI01000054_02824071_02824355.mRNA | mRNA | downstream | 277627 | 2824025 ~ 2824642 (+) | True | CI01000054_02824071_02824355 |
| TU261855 | other | upstream | 241252 | 2289831 ~ 2304382 (+) | True | CI01000054_02289802_02330591 |
| TU261003 | other | upstream | 818841 | 1725669 ~ 1726793 (+) | True | CI01000054_01725792_01726688 |
| TU260765 | other | upstream | 884069 | 1650960 ~ 1661565 (+) | True | CI01000054_01650242_01665628 |
| TU260728 | other | upstream | 963565 | 1578435 ~ 1582069 (+) | True | G229750 |
| TU260932 | other | upstream | 1138504 | 1397080 ~ 1407130 (+) | False | G229936 |
| TU261835 | other | downstream | 532104 | 3078502 ~ 3087392 (+) | True | G230689 |
| TU262576 | other | downstream | 1362053 | 3908451 ~ 3913546 (+) | True | CI01000054_03848427_03914231 |
| TU263121 | other | downstream | 1860754 | 4407152 ~ 4450730 (+) | True | G231863 |
| TU263797 | other | downstream | 3076617 | 5623015 ~ 5623101 (+) | True | G232485 |
| TU263881 | other | downstream | 3447262 | 5993660 ~ 6041863 (+) | True | G232558 |
