Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000137 |
| length | 936 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 3 |
| gene id | XLOC_000068 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 6189949 ~ 6210718 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008150 | biological_process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-061215-128 | Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RETREG2 (reticulophagy regulator family member 2). |
| ensembl_id | ENSDART00000140936 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000135 | lncRNA | upstream | 4465 | 6182344 ~ 6185532 (+) | True | XLOC_000067 |
| TCONS_00000133 | lncRNA | upstream | 10441 | 6173484 ~ 6179556 (+) | False | XLOC_000067 |
| TCONS_00000131 | lncRNA | upstream | 12660 | 6171843 ~ 6177337 (+) | False | XLOC_000067 |
| TCONS_00000128 | lncRNA | upstream | 23443 | 6162013 ~ 6166554 (+) | False | XLOC_000067 |
| TCONS_00003020 | lncRNA | upstream | 390905 | 5795013 ~ 5799092 (+) | False | XLOC_000065 |
| TCONS_00003022 | lncRNA | downstream | 183115 | 6379878 ~ 6554470 (+) | True | XLOC_000072 |
| TCONS_00003023 | lncRNA | downstream | 201447 | 6398210 ~ 6403223 (+) | True | XLOC_000073 |
| TCONS_00000148 | lncRNA | downstream | 468270 | 6665033 ~ 6668339 (+) | True | XLOC_000076 |
| TCONS_00003024 | lncRNA | downstream | 562420 | 6759183 ~ 6760930 (+) | True | XLOC_000077 |
| TCONS_00000153 | lncRNA | downstream | 760150 | 6956913 ~ 6990027 (+) | True | XLOC_000080 |
| TCONS_00000132 | mRNA | upstream | 6769 | 6172786 ~ 6183228 (+) | False | XLOC_000067 |
| TCONS_00000130 | mRNA | upstream | 7479 | 6171585 ~ 6182518 (+) | False | XLOC_000067 |
| TCONS_00000129 | mRNA | upstream | 17669 | 6162090 ~ 6172328 (+) | False | XLOC_000067 |
| TCONS_00000127 | mRNA | upstream | 20180 | 6161930 ~ 6169817 (+) | False | XLOC_000067 |
| TCONS_00000125 | mRNA | upstream | 31388 | 6135176 ~ 6158609 (+) | False | XLOC_000066 |
| TCONS_00000138 | mRNA | downstream | 10187 | 6206950 ~ 6210718 (+) | True | XLOC_000068 |
| TCONS_00000139 | mRNA | downstream | 28730 | 6225493 ~ 6240518 (+) | False | XLOC_000069 |
| TCONS_00000140 | mRNA | downstream | 29372 | 6226135 ~ 6243978 (+) | False | XLOC_000069 |
| TCONS_00000141 | mRNA | downstream | 47143 | 6243906 ~ 6272146 (+) | True | XLOC_000069 |
| TCONS_00000142 | mRNA | downstream | 110542 | 6307305 ~ 6329292 (+) | True | XLOC_000070 |
| TCONS_00000134 | other | upstream | 4465 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000123 | other | upstream | 687913 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000120 | other | upstream | 702835 | 5437390 ~ 5487162 (+) | False | XLOC_000062 |
| TCONS_00000121 | other | upstream | 739553 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000117 | other | upstream | 771490 | 5402534 ~ 5418507 (+) | True | XLOC_000060 |
| TCONS_00000149 | other | downstream | 590927 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000154 | other | downstream | 867074 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000208 | other | downstream | 2957331 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 2958230 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000213 | other | downstream | 3021885 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
