RNA id: TU287728


Basic Information

Item Value
RNA id TU287728
length 210
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G253509
representative True

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 4529083 ~ 4529292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCATTTTTGGGTGAACTAACCCCTTTAAGGCCTGTTCCACAGGTGCGTGTGCAATAATTGTTAATGGTTCACTGAACGAGCATGAAAAACAGTGTTTAAACACTTTCCAATAATGATATGTAATGCTTATTTGGATTTTACAAAATTATCTTTAAAAGAGAGTATCAAAAAAGGACTTTTCTTTTTCTTTCTATTTTTCTTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287725 lncRNA upstream 13247 4480684 ~ 4515836 (+) True G253506
TU287569 lncRNA upstream 53054 4473541 ~ 4476029 (+) True G253363
TU287568 lncRNA upstream 53132 4473541 ~ 4475951 (+) False G253363
TU287723 lncRNA upstream 58568 4470270 ~ 4470515 (+) True G253504
TU287701 lncRNA upstream 104033 4385446 ~ 4425050 (+) True G253482
TU287588 lncRNA downstream 72486 4601778 ~ 4602016 (+) True G253377
TU287579 lncRNA downstream 72837 4602129 ~ 4603851 (+) True G253369
TU287594 lncRNA downstream 77488 4606780 ~ 4607960 (+) True G253383
TU287770 lncRNA downstream 152383 4681675 ~ 4682157 (+) True G253548
TU287776 lncRNA downstream 165401 4694693 ~ 4694908 (+) True G253554
CI01000059_04479563_04499562.mRNA mRNA upstream 28655 4479083 ~ 4500428 (+) True CI01000059_04479563_04499562
CI01000059_04472236_04475254.mRNA mRNA upstream 53350 4471743 ~ 4475733 (+) False CI01000059_04472236_04475254
CI01000059_04427836_04462926.mRNA mRNA upstream 66128 4427836 ~ 4462955 (+) True CI01000059_04427836_04462926
CI01000059_04381041_04393828.mRNA mRNA upstream 135036 4380956 ~ 4394047 (+) True CI01000059_04381041_04393828
CI01000059_04337486_04338454.mRNA mRNA upstream 189366 4336934 ~ 4339717 (+) True CI01000059_04337486_04338454
CI01000059_04533856_04536270.mRNA mRNA downstream 4237 4533529 ~ 4536388 (+) True CI01000059_04533856_04536270
CI01000059_04537580_04540637.mRNA mRNA downstream 8288 4537580 ~ 4540818 (+) True CI01000059_04537580_04540637
CI01000059_04542374_04554071.mRNA mRNA downstream 13082 4542374 ~ 4554926 (+) True CI01000059_04542374_04554071
CI01000059_04558576_04590484.mRNA mRNA downstream 29284 4558576 ~ 4590721 (+) True CI01000059_04558576_04590484
CI01000059_04597371_04601178.mRNA mRNA downstream 68035 4597327 ~ 4601347 (+) True CI01000059_04597371_04601178
TU286863 other upstream 1325992 3202739 ~ 3203091 (+) True G252732
TU285978 other upstream 2393905 2131492 ~ 2131636 (+) True G251935
TU286110 other upstream 2457159 2069478 ~ 2069578 (+) True G252061
TU285191 other upstream 2867693 1627766 ~ 1661390 (+) True G251249
TU284915 other upstream 3461726 1064869 ~ 1067357 (+) True G251017
TU287891 other downstream 708467 5237759 ~ 5238233 (+) True G253654
TU289048 other downstream 1730751 6260043 ~ 6261633 (+) True G254692
TU289941 other downstream 2915650 7444942 ~ 7450195 (+) True G255434
TU290615 other downstream 3824927 8354219 ~ 8354873 (+) True G256046
TU290566 other downstream 4102659 8631951 ~ 8632104 (+) True G255998

Expression Profile