RNA id: TCONS_00016987


Basic Information

Item Value
RNA id TCONS_00016987
length 2898
RNA type mRNA
GC content 0.55
exon number 19
gene id XLOC_008489
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22722682 ~ 23188894 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTCGCAGCCTGGGCGCCTCTGCTCTTCTTAGCCATGTGGGTGAGAAACGCCACCAGTGGCCCGCTCTCATTCAGAATAGCTGCCATTCTTGATGACCCGATGGAGTGTAGCCGAGGGGAGCGACTGGCCATCACTCTGGCCAAAGACAGCATCAACCGTTCCAGCAATCGCTCCACCACTGGCAAACTGGAGGTGGACATCTTTGAGCTGCTCCGAGACAGTGAATACGAGACAGGGGAAACAATGTGCCAGATCATGTCCAAGGGGGTGGTGGCGGTCCTGGGCCCCTCTGCCAGCCCGGCATCCAACTCCATCATCAGTAATATCTGCGGAGAGAAAGAGGTGCCCTACGTGAAGGTGGCTCCGGAGGACATACTCAAGGTGCAGTTTCCTCGCTTTACCACGCTGGACCTCAGGCCCACGAACACAGACATCAGCATGGCTGTAGCTGGGTTGCTAACTTTCTTCAACAGCAGCACATCGTGTCTCATATGTGCTCAGGCTGACTGCCTATTAAACCTGGAGGTGTTACTGCGACAGTTTCTCATCTCGAAGGAAACCCTTTCCGTTCGCATGCTGGATGACAGCCAGGATCCCACCCCGCTTCTCAAGGAGATCCGTGATGACAAGACTGCTACTATAATAGTGGATGCCAACGCCACCATGTCTCATGTTATTTTGGAAAGGGCCTCAGAGTTGGGGATGCTGTCAGTCTACTACACCTACATCCTGACTTCCTTGGAATTCTCTTTGCTACGATTGGACGATTTAGCTGATCAGCGAGTCAACATCGTGGGCTTTTCAGTCTTCAACAGGACACATCCTTTCTTTCAGGACTTTGTGCTCAGCCTCAATCGATCCTGGCAGGAGAACTGTGATCACGCACCGTTTGCAGGAACACCGctgTCATCAGCGCTGCTGTTTGATGCGGTACATACGGTGGTGGCAGCCGTGCAGGAGCTGAACCGCAGCCAGAACGTAGGAGCCACTCAGCTCTCCTGCAAGTCCTCTAAGATCTGGGAGCACGGCACGAGTCTGATGAACTACCTGAGGATGGTAGAGTTGGAAGGTCTAACAGGCCACATCGAGTTCAACAGCAAAGGCCAGCGTTCGAACTATGCCCTGCGGATCATGCAGAACAGCAGGGATGGCCTAAGGCAGATCGGTCAATGGCATTCAGAGCAGGGACTGTCCATGGAGAGGAAGCTTCCTTCACTTAACGTGACGGACACACTATTCAACACCACTCTCACCATAACTACCATTCTGGAGAACCCGTATGTAATGTTGAGAGCCAATCACCAGGAGCTTGAAGGGAACGATCGCTATGAGGGCTTCTGTGTGGACATGCTAAAGGAGCTGGCGGACATCTTGAAGTTCAAGTACCGTATTCGGCTAGTCGGGGATGGTGTGTATGGGGTGCCGGGAGCTAACGGTACCTGGACAGGGATGGTGGGAGAGCTCATCAGCAGGAAAGCTGACTTGGCTGTGGCCGCACTGACCATCACGGCTGAGAGAGAGAAAGTCATCGATTTCTCCAAACCCTTCATGACTCTAGGGATCAGCATCATGTACAGAGTTCACATAGGAAGAAGACCGGGGTATTTCTCCTTTTTGGATCCGTTCTCTCCTGGGGTTTGGCTTTTCATGTTGCTGGCGTACCTGGCTGTCAGCTGCGTGCTCTTTTTGGTGGCGAGACTAACACCCTACGAATGGTACAACCCTCACCCTTGCCTAAAGGGGCGCTGCAGCCTGCTCATTAACCAGTACTCTCTGGGCAACAGTTTCTGGTTTCCTGTAGGGGGGTTCATGCAGCAAGGCTCCACCATCGCCCCAAGAGCTCTGTCCACACGGTGTGTCAGTGGAGTATGGTGGGCCTTTACCTTGATCATCATCTCTTCCTACACAGCCAACCTGGCGGCCTTTCTCACTGTGCAGAGGATGGAGGTGCCCATCGAGTCGGTAGATGATCTGGCTGACCAGACGGCCATTGAATATGGCACCATGCACGGCGGGTCCACAATGACCTTCTTCCAGAACTCCCGCTACCAGACATACCAGCGCATGTGGAACTTCATGTACTCCAAGCAGCCCAGTGTGTTTGTGAAGAGCACGGAGGAGGGCATAGCACGAGTGCTGAACTCCAATTATGCCTACCTGCTAGAGAGCACCATGAACGAGTACTATCGCCAACGCAACTGTAACCTCACCCAGATCGGAGGCCTGCTGGACACCAAGGGCTATGGCATTGGCATGCCTCTTGGCTCTGTCTACAGAGATGAGTTTGATCTGGCTATACTCAGACTCCAGGAGGAAAACCGCCTAGAGATCCTGAAAAGGAAATGGTGGGATGGTGGCAAATGTCCGAAAGAGGAGGATCATCGAGCGAAAGGTCTGGGCATGGAGAACATCGGTGGGATCTTTGTGGTGTTAGTGTGCGGTTTGCTGGTGGCCATCTTCATGGCAGTGCTGGAGTTTGTGTGGATGCTCCGTCATACGCCAGGAACAGAGCTGTCCGTGTGCGAGGAGATGCTTCGAGAGCTGCAGGGCATCGTGCTGTGCCAGGACAGCCTACAGTTACGGCGCAGGCGTGGAGCCAGCGTGTTACGACCGCAGCCTCTGCCCCTGGATGAACGGCGGGCGAGGGCGGCAGCGGCGAGTCTCAGCAACGGCAAGCTGTGCACGGGCACGGGCCTGTCCGAACCGCTCTCCCACAGACTGGCGCAGGAGGCCGCCCTGGTGGCGCGAGGCTGCAGTCACATTCGCATCTGCCCGGAGTGCCGGCGCTTTCAGGGCATTCGCGTACGCCcgtccggccctccaggagcttCGCCCAGCCACAGCGAGGAGAGTATAGAGTGGGAGAAAGGCACCAACAACAGTGAACACGAATAA

Function

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0032983 kainate selective glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0015277 kainate selective glutamate receptor activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070821-5 Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Orthologous to human GRIK4 (glutamate ionotropic receptor kainate type subunit 4).

Ensembl:

ensembl_id ENSDART00000035812

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018953 lncRNA upstream 306037 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00018952 lncRNA upstream 308202 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018951 lncRNA upstream 316146 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018949 lncRNA upstream 500652 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018954 lncRNA downstream 19577 23207159 ~ 23207464 (+) True XLOC_008490
TCONS_00018955 lncRNA downstream 79076 23266658 ~ 23268377 (+) True XLOC_008492
TCONS_00016992 lncRNA downstream 256092 23443674 ~ 23445988 (+) False XLOC_008495
TCONS_00018956 lncRNA downstream 280402 23467984 ~ 23505657 (+) True XLOC_008496
TCONS_00016998 lncRNA downstream 340605 23528187 ~ 23529174 (+) False XLOC_008497
TCONS_00016983 mRNA upstream 328331 22448456 ~ 22538843 (+) False XLOC_008487
TCONS_00016982 mRNA upstream 328331 22448456 ~ 22538843 (+) False XLOC_008487
TCONS_00016981 mRNA upstream 328331 22448456 ~ 22538843 (+) True XLOC_008487
TCONS_00016980 mRNA upstream 422428 22435460 ~ 22444746 (+) True XLOC_008486
TCONS_00016978 mRNA upstream 435589 22394074 ~ 22431585 (+) True XLOC_008484
TCONS_00016988 mRNA downstream 20460 23208042 ~ 23265405 (+) True XLOC_008491
TCONS_00016989 mRNA downstream 169018 23356600 ~ 23358807 (+) True XLOC_008493
TCONS_00016991 mRNA downstream 256083 23443665 ~ 23451449 (+) False XLOC_008495
TCONS_00016995 mRNA downstream 335755 23523337 ~ 23528714 (+) False XLOC_008497
TCONS_00016994 mRNA downstream 335755 23523337 ~ 23528714 (+) False XLOC_008497
TCONS_00016984 other upstream 104736 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other upstream 134141 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016979 other upstream 452921 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016972 other upstream 863978 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016964 other upstream 1097165 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016990 other downstream 190489 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016993 other downstream 258607 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00017027 other downstream 1376186 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00017035 other downstream 1489331 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017050 other downstream 1774554 24962136 ~ 24962252 (+) True XLOC_008523

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_03497623_03625293.mRNA True 2865 mRNA 0.55 18 CI01000072 3497623 ~ 3625293 (-)
bowfin (Amia calva) AMCG00004521 True 9105 mRNA 0.48 10 CM030121.1 52254843 ~ 52296244 (-)