RNA id: CI01000189_03344581_03361919.mRNA


Basic Information

Item Value
RNA id CI01000189_03344581_03361919.mRNA
length 2229
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000189_03344581_03361919
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3344581 ~ 3362813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCCCAAACAGAGGCGGAGGTCGCTGAGAGAGGCGGTGTTCTCCCGTTCGTCTCTTGTTTACGACGGATCAGGGAGAGGAGGAGGAGAACGCGCAGGAAACTTTTCATCCACAGAGATATGTGATGATCAAGCACAGATGGCGGAACAGTACAGTGGGCAAGCAGGCTTTTTCTGCGACGGTAAGCCGGGGAGAGGGTGCCTAGTGCCGCAGGTGACCATCACTTCTGATGGGGACTCACGGGAGATCACTGCGGAGGATCTGGAGGAGGACGAGGTGAACGGACGGCTGCGCCGCAAGCTCTCCAACTCCTCAATCTCTTCCAACGGCTCCTCAACGGTGTTTGACGAATCGGAGGATGACATCCTCAGCGACAACGAGACCAAAAGCAAAGGCATCGTGACTCTGGAACATTTGGGGGACTCCGTAGATTCAGGAGAGCAAAGCAATGCCTGGTGGAAGCTGAAGACTATTGTCCATTGCCCTTTGGTGGCATCACAACGAAGACGCCTACCCTGGGTTCAGTTAGCAGGCCATAAAGGCAGCTTTAAAGCAGGGGATGAGGGCACCATACTGAAGAAGTTCTCAGAGAATGAGAAGCTGTGTTTTGAGAGGCTGAAAGAGGATGCTTTACATTCCTTTGTGCCCGGCTACTATGGAGTGGTGGAGAGAGACGGAGAGCTCTTTCTCAAAATGAAAGACCTGTTGGCCAACTTTGATTTGCCGAACGTCATGGACTGCAAGATGGGAGTGAGGACATATCTGGAGGAGGAGCTGGTGCGGGCAAGGGTGAAGCCAAAGCTGCGTGAGGACTTGTATAATAAGATGCTGGAGGTGGACAGTGAGGCTCCAACAGCAGAGGAGAAGAAGCAGCAGGCAGTTACCAAACCACGCTACATGCAGTGGAGAGAAAGCGTCAGCTCTACTAACACTCTGGGCTTCCGCATTGAGGGTATCAAGAGAGGAGAAACCTGCAACACAGACTTTAAAAAGACCCGGTCAATGGAAGACGTTATTCAGGTCTTTAAGGATTTCGTCGAAGGCAATAAAAACATAATTAACTCTTATATTACAAGGCTTGACGATATTAAACAGGCACTGAAAGCCTCAGAATTCTTCAAGAAACACGAGGTCATTGGCAGTTCGCTTCTCTTCATTCACGATCACAAAAATAGAGCTGAAGTCTGGCTCATTGATTTTGGTAAAACCACACCTCTTCCAGATGGACAGAACCTGGATCACTACAGACCCTGGGAGGAAGGCAACCGAGAAGACGGATACTTATGGGGCCTTGACAACCTGCTGCAAACCCTTTCCTTATTAGCCAGGGAGTGACCTTCTTACTGCAAACTTTTTTACTTACTGTCCTGGTGACAGCAACGGCATGCTGATAGACACTTATAAACCTTCTGCAGTGCATTATGGGGAGACTACCAGTGAGCAAGTCCATTACTTTACAGTATTAAGCTGTAAAAAGCATTTGACCATGATCATGGTTTCAAAAACCCAAATTTGTTTGTTGTCATTGCACATCATACAATCATTACTGTTCCCCAATGTCCAGGTGTAGTTTGTAAAAAAAAAAAAAAAAATCACATACAGGCACAATGTATATTTGTCAATATATATTTTACAAAACTAACTTCAAGCACTTAACCATAAAACTTTCGATCATAAGGGACAAATTCAGTTAAGCTTGTCAATTTTTTTGGTTGGTAGGTTGGTAGTTTGCATGCTTGAATCTATCAAAATCAATAATTTCTTCACACATCATATAAGACAGACTCAAAGCTAGTTGTTGGCTGTTCCATGTCTAGGCCCAACGAACACTAGTCAAACAAGTGACATTGCACAACTGACTGTTTTCTTCAAATACCATCAAACTAACACGTACAGTAGGTGCAGCACATGATTGCAGTGTGCTACATGAAATGCATACAGTGATACAATGTGATTAATGCACAACACTAGTGCATTTATAGTACAATGTGATGATAATAATCACTTTGACTTCAGTGATCAATCAAGGGTGGTGTAACAGATTCTTTGGATGATTGCATAGATATATAGTATTGGTTTTACGTATAAGAACCTGGGTTGTGATTTTATAAACCTGCACACCACTGAAAGTGTTTCATTATAAGACAAACTTAACGTTGTGACACTATTTTGTTTAGGGGGGCAGGTGAGTTTCATTACAGTGTTCCCTGTGCAGTATGTTTATGACCA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436007 lncRNA upstream 109899 3231026 ~ 3234682 (+) True G381392
TU435947 lncRNA upstream 229662 3112727 ~ 3114919 (+) True G381334
TU435962 lncRNA upstream 252287 3090189 ~ 3092294 (+) True G381349
TU435913 lncRNA upstream 358468 2985273 ~ 2986113 (+) False G381311
TU436083 lncRNA downstream 130831 3493644 ~ 3494342 (+) True G381455
TU436135 lncRNA downstream 162944 3525757 ~ 3530119 (+) True G381490
TU436113 lncRNA downstream 336406 3699219 ~ 3707304 (+) True G381478
TU436197 lncRNA downstream 349350 3712163 ~ 3712627 (+) True CI01000189_03713203_03738458
TU436205 lncRNA downstream 380500 3743313 ~ 3743744 (+) True G381558
CI01000189_03273853_03274959.mRNA mRNA upstream 68035 3273853 ~ 3276546 (+) True CI01000189_03273853_03274959
CI01000189_03263017_03269532.mRNA mRNA upstream 74835 3263017 ~ 3269746 (+) True CI01000189_03263017_03269532
CI01000189_03247095_03253475.mRNA mRNA upstream 91006 3247095 ~ 3253575 (+) True CI01000189_03247095_03253475
CI01000189_03119656_03124409.mRNA mRNA upstream 219508 3119656 ~ 3125073 (+) True CI01000189_03119656_03124409
CI01000189_03105976_03111686.mRNA mRNA upstream 232042 3105976 ~ 3112539 (+) True CI01000189_03105976_03111686
CI01000189_03479355_03480905.mRNA mRNA downstream 116542 3479355 ~ 3481218 (+) True CI01000189_03479355_03480905
CI01000189_03485572_03492384.mRNA mRNA downstream 122759 3485572 ~ 3492384 (+) True CI01000189_03485572_03492384
CI01000189_03504269_03505449.mRNA mRNA downstream 141456 3504269 ~ 3505545 (+) True CI01000189_03504269_03505449
CI01000189_03559325_03563414.mRNA mRNA downstream 196512 3559325 ~ 3563604 (+) True CI01000189_03559325_03563414
CI01000189_03573515_03603610.mRNA mRNA downstream 209378 3572191 ~ 3603804 (+) True CI01000189_03573515_03603610
TU435687 other upstream 503456 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 2285196 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434221 other upstream 2331678 1012546 ~ 1012903 (+) False G379799
TU434222 other upstream 2331747 1012546 ~ 1012834 (+) True G379799
TU433965 other upstream 2847673 475615 ~ 496908 (+) True G379600
TU436136 other downstream 262923 3625736 ~ 3626855 (+) True G381491
TU436323 other downstream 757574 4120387 ~ 4122344 (+) True G381655

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022989 True 3108 mRNA 0.44 7 NC_007128.7 31363000 ~ 31394615 (+)