RNA id: TU436083


Basic Information

Item Value
RNA id TU436083
length 674
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id G381455
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3493644 ~ 3494342 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTTATTGTTTCATTTGTCCTATTATATAAAATATTAAAAAGCCTGAACACTAAATCAAATCTTTTGAGTTGTTCCACTTACAAATCATCCATTGCAGTCACTGATGTCTAAGCAAGCCACTACAAATGTCCAGAAATGCTTTGATGGATCAGGTATCCAGCAGTTCACTAATTTTACACTGATAGAAAAAAAAATAATATAATACATGATGCTGGTTACCAGCAATGAAACCCTCCGGTTTTGGTCTGAAATGTGGAACATTTATTTATTATTATTATAAAAGAAAATCTTACAAAAAATGAAACGTGCCTGAAAATTTACATACTGCCGCAGAATATACTCCATAAATCTGTTCTCTCTAATGTATCGAAGTTCCTTGTCACCAACCACTAGGTACACGGAATACAGACAATATTAAACAAAATATGAAAGCTTATAGTTAGATGTATACAGAAAATACAAATGTAAAAATGTATACTAAATCTAGTCAATGATTTTGTAATTAGTTCATTTTATCATTTTACTGTCCACTAGTATCCTGAACAAACAGTGAGCGATTTTCATTCTGAAAATCTTTATCAAATAGACGTGTCTGTGAATGTCCTCGTCGCTTAAGAACTTGCTTGTACAGGTTCTCGACCTCAGTGACCTGAGCGAGCAGTTGAGTTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436007 lncRNA upstream 258962 3231026 ~ 3234682 (+) True G381392
TU435947 lncRNA upstream 378725 3112727 ~ 3114919 (+) True G381334
TU435962 lncRNA upstream 401350 3090189 ~ 3092294 (+) True G381349
TU435913 lncRNA upstream 507531 2985273 ~ 2986113 (+) False G381311
TU435914 lncRNA upstream 507531 2985273 ~ 2986113 (+) True G381311
TU436135 lncRNA downstream 31415 3525757 ~ 3530119 (+) True G381490
TU436113 lncRNA downstream 204877 3699219 ~ 3707304 (+) True G381478
TU436197 lncRNA downstream 217821 3712163 ~ 3712627 (+) True CI01000189_03713203_03738458
TU436205 lncRNA downstream 248971 3743313 ~ 3743744 (+) True G381558
TU436203 lncRNA downstream 252458 3746800 ~ 3751955 (+) True G381556
CI01000189_03485572_03492384.mRNA mRNA upstream 1260 3485572 ~ 3492384 (+) True CI01000189_03485572_03492384
CI01000189_03479355_03480905.mRNA mRNA upstream 12426 3479355 ~ 3481218 (+) True CI01000189_03479355_03480905
CI01000189_03344581_03361919.mRNA mRNA upstream 130831 3344581 ~ 3362813 (+) True CI01000189_03344581_03361919
CI01000189_03273853_03274959.mRNA mRNA upstream 217098 3273853 ~ 3276546 (+) True CI01000189_03273853_03274959
CI01000189_03263017_03269532.mRNA mRNA upstream 223898 3263017 ~ 3269746 (+) True CI01000189_03263017_03269532
CI01000189_03504269_03505449.mRNA mRNA downstream 9927 3504269 ~ 3505545 (+) True CI01000189_03504269_03505449
CI01000189_03559325_03563414.mRNA mRNA downstream 64983 3559325 ~ 3563604 (+) True CI01000189_03559325_03563414
CI01000189_03573515_03603610.mRNA mRNA downstream 77849 3572191 ~ 3603804 (+) True CI01000189_03573515_03603610
CI01000189_03617026_03619754.mRNA mRNA downstream 122684 3617026 ~ 3619805 (+) True CI01000189_03617026_03619754
CI01000189_03624163_03629420.mRNA mRNA downstream 129821 3624163 ~ 3630008 (+) True CI01000189_03624163_03629420
TU435687 other upstream 652519 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 2434259 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434221 other upstream 2480741 1012546 ~ 1012903 (+) False G379799
TU434222 other upstream 2480810 1012546 ~ 1012834 (+) True G379799
TU433965 other upstream 2996736 475615 ~ 496908 (+) True G379600
TU436136 other downstream 131394 3625736 ~ 3626855 (+) True G381491
TU436323 other downstream 626045 4120387 ~ 4122344 (+) True G381655

Expression Profile