RNA id: TU510436


Basic Information

Item Value
RNA id TU510436
length 463
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G444656
representative True

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 339368 ~ 356049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTTGACCTGAACATGACATCTGTGTGAGCCGTGCTTCAAGTTACACTATTGACAATGGACCTTTTTTGCCAGCAAAAATTTTAGCTAATGTGACAGCACCTTATGAAGTCCAACATGAAACGGTTGGTTGTAAAAGAAACAAGATATGATAGAGAGGAAAAGGAAAGTGGGATATCTACCGGTGAACATACTTGCATCATCCCTCTCCACCCTGGTGCCGTCACTGGTGGAGACGCAAGTAAAGTGCAGGGGTTCGACCTCCAGCAGGCCAGTCAGAGCAGTGAAACTGCCCTCTGCCACCCCGCTGCTGTTCACCTTCCCATTACCTGACAGACAAAAAAAAAAGCAAAACATTAAATGTGCAAAAATAAATAAATAAAATAAATAAATATGTAAATGACTAATATTTCCAAGTCGACTAACAGCAGCAGTATTGTTTAATCGACTAGTCAAATAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510484 lncRNA downstream 15073 323329 ~ 324295 (-) True G444692
TU510379 lncRNA downstream 79154 255617 ~ 260214 (-) True G444605
TU510392 lncRNA downstream 137178 182864 ~ 202190 (-) False G444617
TU510391 lncRNA downstream 137178 201567 ~ 202190 (-) True G444617
TU510386 lncRNA downstream 163084 175166 ~ 176284 (-) True G444612
TU510534 lncRNA upstream 74426 430475 ~ 430722 (-) True G444740
TU510535 lncRNA upstream 75343 431392 ~ 431624 (-) True G444741
TU510599 lncRNA upstream 186028 542077 ~ 544074 (-) True G444799
TU510617 lncRNA upstream 335503 691552 ~ 693656 (-) True G444812
TU510713 lncRNA upstream 372572 728621 ~ 728876 (-) True G444892
CI01000313_00311563_00321609.mRNA mRNA downstream 17759 311472 ~ 321609 (-) True CI01000313_00311563_00321609
CI01000313_00294667_00301218.mRNA mRNA downstream 38150 294104 ~ 301218 (-) True CI01000313_00294667_00301218
CI01000313_00117452_00118526.mRNA mRNA downstream 220842 116594 ~ 118526 (-) True CI01000313_00117452_00118526
CI01000313_00028124_00047785.mRNA mRNA downstream 291583 27846 ~ 47785 (-) True CI01000313_00028124_00047785
CI01000313_00016648_00018929.mRNA mRNA downstream 319961 16370 ~ 19407 (-) True CI01000313_00016648_00018929
CI01000313_00698894_00703473.mRNA mRNA upstream 342845 698894 ~ 703473 (-) True CI01000313_00698894_00703473
CI01000313_00713063_00727810.mRNA mRNA upstream 356957 713006 ~ 727810 (-) True CI01000313_00713063_00727810
CI01000313_00819117_00821323.mRNA mRNA upstream 462768 818817 ~ 821474 (-) True CI01000313_00819117_00821323
CI01000313_00822941_00823338.mRNA mRNA upstream 466410 822459 ~ 823338 (-) True CI01000313_00822941_00823338
CI01000313_00897217_00899112.mRNA mRNA upstream 539950 895999 ~ 899207 (-) True CI01000313_00897217_00899112
TU510429 other upstream 15471 371520 ~ 373464 (-) True G444653
TU510506 other upstream 41558 397607 ~ 400096 (-) False G444714
TU510507 other upstream 41558 397607 ~ 399624 (-) True G444714
TU510647 other upstream 630965 989167 ~ 989292 (-) True G444832

Expression Profile