RNA id: TU510429


Basic Information

Item Value
RNA id TU510429
length 576
RNA type TUCP
GC content 0.56
exon number 3
gene id G444653
representative True

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 371520 ~ 373464 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCTGTTAAGCAGACCGGGCAAGTCGTAGTCCACTGGTAGCTCGTAACTGTGCCATAAGACAGACGCCACACAGTGCAGGTGTGACGGGGACGGCATGAGCAACCCGTATTCCCGTGGGGGCGGAGCGTTCGGACCCACGTAGCCTGACGGAGAACTCTGTTTCAGGGCAGCAACCTGGGAGGAGTCATACACCCACTGTAGCAGAGCCTGGATCCTGTCTTTGGTACCGGGGTCCTGAGTAGTGCCAAGCTGGTACAGGATGTCTATGGTTGAGTCTGACGACAGGCCATTTAACCTCCCGAAGAGCAGTGGACTGTTCAGATTGGCCAAATCAGTGCCAGAAGCAGCACAGTTGCGCAGCAAGATGTCGATGAGTTTGAGGCCTATGCGTGTGGACTGGAGGCCGATCTTCACTAGCACTGCTTCGATGTTGGGTGAGTGCATGCCGCAATACGGGGACATGAGGAGGGCGGCGCAGGTCTGCAGGAGGTTTGCCGTAGGAGCAGCAGCACTGGCCATCATGGCCTCCAGATCAGAAACGTGAGTCAAACAATGATGCAGCAACCGTAACCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510436 lncRNA downstream 15471 339368 ~ 356049 (-) True G444656
TU510439 lncRNA downstream 20679 345557 ~ 350841 (-) True G444658
TU510484 lncRNA downstream 47225 323329 ~ 324295 (-) True G444692
TU510379 lncRNA downstream 111306 255617 ~ 260214 (-) True G444605
TU510392 lncRNA downstream 169330 182864 ~ 202190 (-) False G444617
TU510534 lncRNA upstream 57011 430475 ~ 430722 (-) True G444740
TU510535 lncRNA upstream 57928 431392 ~ 431624 (-) True G444741
TU510599 lncRNA upstream 168613 542077 ~ 544074 (-) True G444799
TU510617 lncRNA upstream 318088 691552 ~ 693656 (-) True G444812
TU510713 lncRNA upstream 355157 728621 ~ 728876 (-) True G444892
CI01000313_00311563_00321609.mRNA mRNA downstream 49911 311472 ~ 321609 (-) True CI01000313_00311563_00321609
CI01000313_00294667_00301218.mRNA mRNA downstream 70302 294104 ~ 301218 (-) True CI01000313_00294667_00301218
CI01000313_00117452_00118526.mRNA mRNA downstream 252994 116594 ~ 118526 (-) True CI01000313_00117452_00118526
CI01000313_00028124_00047785.mRNA mRNA downstream 323735 27846 ~ 47785 (-) True CI01000313_00028124_00047785
CI01000313_00016648_00018929.mRNA mRNA downstream 352113 16370 ~ 19407 (-) True CI01000313_00016648_00018929
CI01000313_00698894_00703473.mRNA mRNA upstream 325430 698894 ~ 703473 (-) True CI01000313_00698894_00703473
CI01000313_00713063_00727810.mRNA mRNA upstream 339542 713006 ~ 727810 (-) True CI01000313_00713063_00727810
CI01000313_00819117_00821323.mRNA mRNA upstream 445353 818817 ~ 821474 (-) True CI01000313_00819117_00821323
CI01000313_00822941_00823338.mRNA mRNA upstream 448995 822459 ~ 823338 (-) True CI01000313_00822941_00823338
CI01000313_00897217_00899112.mRNA mRNA upstream 522535 895999 ~ 899207 (-) True CI01000313_00897217_00899112
TU510506 other upstream 24143 397607 ~ 400096 (-) False G444714
TU510507 other upstream 24143 397607 ~ 399624 (-) True G444714
TU510647 other upstream 613550 989167 ~ 989292 (-) True G444832

Expression Profile