RNA id: TU510713


Basic Information

Item Value
RNA id TU510713
length 256
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G444892
representative True

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 728621 ~ 728876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTAAGACTAATGCATCTTAATGAATATCATCTGGCCTTCATGATATAGCCTATCCAGAAAATAACACAGCAGATTTTCATTTATGAATGCTTAGACATGAAAAGCCAGGAGTCTACATTCTCTAAATATATGGATTCAAAGTGTGAATTGTATCCTTTTTTGAACAAAAGAAAGCTTACACAAGAAGGTCTCGTATGGAATTTAACAATGCACCATAGTCTATAGTGTCATATTACATTTCTTGTGTAAATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU510617 lncRNA downstream 34965 691552 ~ 693656 (-) True G444812
TU510599 lncRNA downstream 184547 542077 ~ 544074 (-) True G444799
TU510535 lncRNA downstream 296997 431392 ~ 431624 (-) True G444741
TU510534 lncRNA downstream 297899 430475 ~ 430722 (-) True G444740
TU510436 lncRNA downstream 372572 339368 ~ 356049 (-) True G444656
TU510730 lncRNA upstream 47129 776005 ~ 776206 (-) True G444909
TU510619 lncRNA upstream 220577 949453 ~ 951138 (-) True G444813
TU510649 lncRNA upstream 222692 951568 ~ 958369 (-) True G444834
TU510775 lncRNA upstream 236471 965347 ~ 965903 (-) True G444954
TU510635 lncRNA upstream 283751 1012627 ~ 1018244 (-) True G444820
CI01000313_00713063_00727810.mRNA mRNA downstream 811 713006 ~ 727810 (-) True CI01000313_00713063_00727810
CI01000313_00698894_00703473.mRNA mRNA downstream 25148 698894 ~ 703473 (-) True CI01000313_00698894_00703473
CI01000313_00311563_00321609.mRNA mRNA downstream 407012 311472 ~ 321609 (-) True CI01000313_00311563_00321609
CI01000313_00294667_00301218.mRNA mRNA downstream 427403 294104 ~ 301218 (-) True CI01000313_00294667_00301218
CI01000313_00117452_00118526.mRNA mRNA downstream 610095 116594 ~ 118526 (-) True CI01000313_00117452_00118526
CI01000313_00819117_00821323.mRNA mRNA upstream 89941 818817 ~ 821474 (-) True CI01000313_00819117_00821323
CI01000313_00822941_00823338.mRNA mRNA upstream 93583 822459 ~ 823338 (-) True CI01000313_00822941_00823338
CI01000313_00897217_00899112.mRNA mRNA upstream 167123 895999 ~ 899207 (-) True CI01000313_00897217_00899112
CI01000313_00977797_00978570.mRNA mRNA upstream 248435 977311 ~ 978584 (-) True CI01000313_00977797_00978570
CI01000313_00982839_00997272.mRNA mRNA upstream 253953 982829 ~ 997590 (-) False CI01000313_00982839_00997272
TU510506 other downstream 328525 397607 ~ 400096 (-) False G444714
TU510507 other downstream 328997 397607 ~ 399624 (-) True G444714
TU510429 other downstream 355157 371520 ~ 373464 (-) True G444653
TU510647 other upstream 258138 989167 ~ 989292 (-) True G444832

Expression Profile