RNA id: TU523810



Basic Information


Item Value
RNA id TU523810
length 1590
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G456303
representative True

Chromosome Information


Item Value
chromosome id CI01000320
NCBI id null
chromosome length 3894707
location 3490374 ~ 3492128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTGCTTGTATGTTGAGTGACCATTAACTGACATCAGAGAACCGTCAACATGCAAATGTGTTGTTAAATTATTAAAATAATAACTTGAAATCTGAGGGGACTATTTCAAGTAAATATTTAACATCTAAGGGGTCTCAGATGACAAAAATGTTTAGGAAGACCTACTCTAAGGTACTAATATGCACCTTTTAATGGGTAGATAAGGTACAAAGTTATCTGCTTAAGGGTACAAGCTGTTGCACCCCTAACAGTAATTTTTTTTTCGACAGTGTTTAAAAAATACATCAGAATAAAAAATCATAAACAAAGTGTTTGTGTAAGCAGATAAGTTTTATGGATCTCTCACCAGTTACCTTGATACTGTGTCTATGGGCAGCGTCCATTACAGCTGGCACTAGATCCTCTGAGGGTTTGCCATGTTCATCTGCCACACCAGGCGGGTACCAGGACAGGACCACCACACCTGCAGCAGCAGCTTCGATTTGCGACATGTGGGATTCAATGACATCTGGATCTCTGGAGCTGTAGGGTCCCAGTTCAGGGTAATAACTGGACGCAATGTCGTCTGGAGGATTGTGTCGTCCTTTCGGGTGACTGGCAGCTATTTTGGGGTCCCAGTGTGGTACCAGTACGTGGTCCCAGTGTATATAACTACTGTCCATCTGTGGCGAGCCATACCATAAATAATAGAAGATGTGAATGTCATAAAATATGCTGTGGTCAGGACCAGAGTTGGAGAACACTATCTTGGTGTCACTCCCCCCACCAGCATTTTGACCTGCTGATTCAACTACATAATTGGGTCTCTGGTCCATTCGCTCTCCCACCAAAGGCATCAACTCCATTCCTGGAGCAAGATCCGAGAAACCATCAGTGGGTTTCAGGGTTCGTAGGCCCATCATAGTACCAAAAATGAAAAGAGTAAACAATAAAAGAGCCACGCACGCTTTCCTGCGTAACCTGTTCATGGTCGCTGTCCGTGGTGCTAGAGAAGACAGTTCAGAAATTGGTTAATATGGTCGAGGCCTCCAAAAGTAGGTTGTAAAATGCTTGTGTTCCATCTCCAGTTCCAGTTTGCCCTATCTATCAAACTTGCGTTTGGCACTCCGGGTTGGTCGCTTGGTCCTCATCAAGAAGCCATTATCTTTGTTACATTAGCGATTTATAAAAACAAATAGCTAGGTAAAAAAATAGCTAAGATGTTTTAATTAATTTCTGAACATACGAGGATATTAAGCTGACAAACCAGCCTACATTATTTATTACGGCATATTTATAACCTAACAGCATTCGCTATATAACTGAATCAACAATTCACAACGCATTTTTTTTTCTTTTTGTTAAAGTCGCACACGCCCGTTTGAATTCGACGCAAAAGCTTCCATGCAATCATGTATTTATCACATACACCGTTGTGTTGCTTCCCACTCGCAAACTGCACGCTGTCTTCTCTCTGGTGTTCTCTCACGCGTGGATTTTTATTCTAATCCTTCTGCGCGGTATAAAACACTTTCACATCAGATGTACTGGCTTTGTGAAAGCATCGGCTGATTTCTGTGCGTCTGTCGCCACTGTGCTCATGATAAATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU523608 lncRNA downstream 3605 3467014 ~ 3486769 (-) True G456117
TU523807 lncRNA downstream 42936 3447185 ~ 3447438 (-) True G456300
TU523765 lncRNA downstream 147806 3342487 ~ 3342568 (-) True G456259
TU523757 lncRNA downstream 191142 3298999 ~ 3299232 (-) True G456251
TU523755 lncRNA downstream 196496 3293203 ~ 3293878 (-) True G456249
TU523818 lncRNA upstream 17851 3509979 ~ 3511517 (-) True G456311
TU523824 lncRNA upstream 40912 3533040 ~ 3533260 (-) True G456316
TU523839 lncRNA upstream 43118 3535246 ~ 3537749 (-) False CI01000320_03536880_03548445
TU523841 lncRNA upstream 44000 3536128 ~ 3537775 (-) True CI01000320_03536880_03548445
TU523844 lncRNA upstream 51935 3544063 ~ 3544966 (-) True G456327
CI01000320_03456251_03458846.mRNA mRNA downstream 31528 3456131 ~ 3458846 (-) True CI01000320_03456251_03458846
CI01000320_03338747_03341584.mRNA mRNA downstream 148790 3338681 ~ 3341584 (-) False CI01000320_03338747_03341584
CI01000320_03332546_03334590.mRNA mRNA downstream 154831 3332141 ~ 3335543 (-) True CI01000320_03332546_03334590
CI01000320_03302588_03304943.mRNA mRNA downstream 185431 3302423 ~ 3304943 (-) True CI01000320_03302588_03304943
CI01000320_03244987_03246052.mRNA mRNA downstream 243856 3243339 ~ 3246518 (-) False CI01000320_03244987_03246052
CI01000320_03521826_03531909.mRNA mRNA upstream 29472 3521600 ~ 3531909 (-) True CI01000320_03521826_03531909
CI01000320_03536880_03548445.mRNA mRNA upstream 44274 3536402 ~ 3548475 (-) False CI01000320_03536880_03548445
CI01000320_03564239_03566141.mRNA mRNA upstream 71646 3563774 ~ 3566985 (-) True CI01000320_03564239_03566141
CI01000320_03639518_03642111.mRNA mRNA upstream 147267 3639395 ~ 3642111 (-) True CI01000320_03639518_03642111
CI01000320_03825336_03853470.mRNA mRNA upstream 332535 3824663 ~ 3853686 (-) True CI01000320_03825336_03853470
TU522089 other downstream 2059721 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522090 other downstream 2059721 1426783 ~ 1430653 (-) False CI01000320_01426753_01430603
TU522091 other downstream 2059721 1426783 ~ 1430653 (-) True CI01000320_01426753_01430603
TU521994 other downstream 2149158 1336279 ~ 1341216 (-) True CI01000320_01338270_01341123
TU522025 other downstream 2348494 1141242 ~ 1141880 (-) True G454686
TU523828 other upstream 151109 3643237 ~ 3648040 (-) False G456317
TU523830 other upstream 151109 3643237 ~ 3648040 (-) True G456317

Expression Profile