RNA id: CI01180000_03223456_03224643.mRNA


Basic Information

Item Value
RNA id CI01180000_03223456_03224643.mRNA
length 724
RNA type mRNA
GC content 0.55
exon number 4
gene id CI01180000_03223456_03224643
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3223402 ~ 3224643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCATTAATAGACAGTGAGCTCTTTCTTTCATTAACCCCGTTGTTTTGTGACGCCATGGAAAAAGGTAATGATGTGAGTTCATTTGGCTGTGAATTCGTGTGCAGATGGACACGAACGGGATCGAAGTCTTCTGCGTTTCCATCGTCCTTCAGCACGTTCGGCTCGTCTCAGATAGATGTTAGCAGTTCTCTGATTCAGTGTGATCTGATGATGACGGTGTCCGTCAGAGGCCTGTATTTCCTCATCACTCTGTTCCTGGGCAGTTTCTTCGGCAGCATCTTCATGTTGGGTCCCGTTCTGCCGCTCATGCTGCTCTCGCCGGCCTGGTATCGCTGGATCACGGACCGCATCGTGGCCACATGGCTCACCCTACCGGTGGCGCTACTGGAGCTGGTGTTCGGGGTGAAGGTGGTCATAACGGGTGACGGCTTCATTCCCGGCGAGCGCAGCGTCATCATCATGAACCACCGTACACGTCTGGACTGGATGTTCCTGTGGTGCTGCCTGCTGCGCTACAGCTACCTACGTCTGGAGAAGATCTGCCTGAAAGCGGCATTGAAGGCCGTGCCCGGGTTCGGTTGGGCCATGCAGGTGGCCTCCTTCATCTTCATCCATCGCCGCTGGGAGGAAGACCGCAGTCACATGTCCAACATGCTGCAGTATTTCTGCCACATCAAGGAGCCGCTGCAGCTGCTGCTCTTCCCCGAAGGCACCGACCTCACC

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG:

id description
K13513 LCLAT1, AGPAT8; lysocardiolipin and lysophospholipid acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801167 lncRNA upstream 43836 3123791 ~ 3179566 (+) True G680317
TU801278 lncRNA upstream 53946 3165488 ~ 3169456 (+) True G680424
TU801181 lncRNA upstream 171377 3051549 ~ 3052025 (+) True G680331
TU801199 lncRNA upstream 255645 2966958 ~ 2967757 (+) True G680349
TU801148 lncRNA upstream 319238 2903841 ~ 2904164 (+) True G680309
TU801606 lncRNA downstream 162584 3387227 ~ 3387686 (+) True G680705
TU801607 lncRNA downstream 163645 3388288 ~ 3388573 (+) True G680706
TU801684 lncRNA downstream 224442 3449085 ~ 3460969 (+) True G680767
TU801714 lncRNA downstream 277466 3502109 ~ 3502348 (+) True G680797
TU801660 lncRNA downstream 292982 3517625 ~ 3524426 (+) True G680743
CI01180000_03210894_03214195.mRNA mRNA upstream 8682 3210894 ~ 3214720 (+) True CI01180000_03210894_03214195
CI01180000_03149731_03154047.mRNA mRNA upstream 69314 3149047 ~ 3154088 (+) True CI01180000_03149731_03154047
CI01180000_03077007_03078238.mRNA mRNA upstream 144603 3076607 ~ 3078799 (+) True CI01180000_03077007_03078238
CI01180000_02998131_03010201.mRNA mRNA upstream 212899 2998131 ~ 3010503 (+) True CI01180000_02998131_03010201
CI01180000_02951792_02968343.mRNA mRNA upstream 255059 2951792 ~ 2968343 (+) True CI01180000_02951792_02968343
CI01180000_03250547_03255754.mRNA mRNA downstream 25904 3250547 ~ 3255868 (+) True CI01180000_03250547_03255754
CI01180000_03280581_03284614.mRNA mRNA downstream 55705 3280348 ~ 3284621 (+) True CI01180000_03280581_03284614
CI01180000_03286578_03289266.mRNA mRNA downstream 61420 3286063 ~ 3289303 (+) True CI01180000_03286578_03289266
CI01180000_03425920_03442839.mRNA mRNA downstream 200871 3425514 ~ 3444183 (+) True CI01180000_03425920_03442839
CI01180000_03447461_03475999.mRNA mRNA downstream 222701 3447344 ~ 3476102 (+) True CI01180000_03447461_03475999
TU801022 other upstream 527966 2694407 ~ 2695436 (+) True G680192
TU801024 other upstream 529168 2693355 ~ 2694234 (+) True G680192
TU800043 other upstream 826042 2388867 ~ 2397360 (+) True G679324
TU799769 other upstream 1423969 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 1667251 1518353 ~ 1556151 (+) True G678946
TU801631 other downstream 328634 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 328919 3553562 ~ 3563250 (+) True G680723
TU801653 other downstream 541048 3765691 ~ 3784441 (+) True G680736
TU802064 other downstream 1558662 4783305 ~ 4785631 (+) True G681137
TU802202 other downstream 2145767 5370410 ~ 5373762 (+) True G681268

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012298 True 2789 mRNA 0.55 6 NC_007124.7 51956397 ~ 51963460 (+)
bowfin (Amia calva) AMCG00004058 True 1218 mRNA 0.62 5 CM030121.1 30924788 ~ 30928491 (+)