RNA id: TU802812


Basic Information

Item Value
RNA id TU802812
length 336
RNA type TUCP
GC content 0.38
exon number 2
gene id G681817
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7403147 ~ 7469605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCGGTCGGTGAATCTGTTGGCGGTGTGTCTGAAGCTCATGTGGTTTTAAGCGTGTTTGTATAATTTTTGTTTTGTTTTGCAAAGAAAAAAAACGTCCATTCGGTTACATTTATGGTATTTGCATTCTATTCTGCAGTTACAAAACGCTGTTCTATTTTTATTGTGTAAGGCTTTGTTGTATGTTAGCTAATCCGGTAGTTAGTTAGACATATTTGCTTTACGTACTGAACTACACTACAAACATTTGATAAGGTTTCAGAGACTTTTAATTCTACACCCAGTTTACCCAGAAAGCAGCAGAAATGAGTGGCATTGTCAAAGAAGAGACACGCAGTGTTTCCCCTCACTGCCCCAAACCTAATGAATCCGAAGAGCCAGAAGGTACTGCAATGGAAGAGACCACTATGGAAAAAAGCCAGCCTGGAGACATGGTTATTACCAAAGAGATGGAGGAGGAGGAGAAGCTTTTAGTGGAGGAGGGAGAGAAGAAAGAGAGAGAAATGATGGAGGAGGTAAACCGTTATATAAATAACCTTTATATCGATATGATTCCTGCTAGGGTTGTTAAAAAAAAAATATATATATATATATATATATATTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802958 lncRNA upstream 13022 7389908 ~ 7390125 (+) True G681933
TU802942 lncRNA upstream 44282 7358638 ~ 7358865 (+) True G681917
TU802934 lncRNA upstream 174783 7227834 ~ 7228364 (+) True G681909
TU802933 lncRNA upstream 181957 7220964 ~ 7221190 (+) True G681908
TU802932 lncRNA upstream 182352 7220579 ~ 7220795 (+) True G681907
TU802988 lncRNA downstream 7387 7476992 ~ 7481834 (+) True G681963
TU802879 lncRNA downstream 22890 7492495 ~ 7496411 (+) True G681854
TU803012 lncRNA downstream 156461 7626066 ~ 7626974 (+) True G681986
TU802877 lncRNA downstream 159491 7629096 ~ 7629573 (+) True G681852
TU803016 lncRNA downstream 176216 7645821 ~ 7646152 (+) True G681990
CI01180000_07335342_07349850.mRNA mRNA upstream 53033 7335294 ~ 7350114 (+) True CI01180000_07335342_07349850
CI01180000_07309116_07321305.mRNA mRNA upstream 81794 7308222 ~ 7321353 (+) True CI01180000_07309116_07321305
CI01180000_07279496_07302239.mRNA mRNA upstream 99251 7279378 ~ 7303896 (+) True CI01180000_07279496_07302239
CI01180000_07222655_07236693.mRNA mRNA upstream 165725 7222623 ~ 7237422 (+) True CI01180000_07222655_07236693
CI01180000_07100974_07142837.mRNA mRNA upstream 260187 7100974 ~ 7142960 (+) True CI01180000_07100974_07142837
CI01180000_07472651_07489000.mRNA mRNA downstream 400 7470005 ~ 7489349 (+) True CI01180000_07472651_07489000
CI01180000_07508387_07529689.mRNA mRNA downstream 38464 7508069 ~ 7530297 (+) True CI01180000_07508387_07529689
CI01180000_07558791_07591349.mRNA mRNA downstream 89186 7558791 ~ 7591892 (+) True CI01180000_07558791_07591349
CI01180000_07630010_07630436.mRNA mRNA downstream 159980 7629585 ~ 7630916 (+) False CI01180000_07630010_07630436
CI01180000_07655737_07662839.mRNA mRNA downstream 185218 7654823 ~ 7662932 (+) True CI01180000_07655737_07662839
TU802641 other upstream 743601 6655846 ~ 6659546 (+) True G681667
TU802663 other upstream 768158 6632908 ~ 6634989 (+) True G681686
TU802553 other upstream 924148 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 2029385 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 2617516 4783305 ~ 4785631 (+) True G681137
TU802830 other downstream 193818 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 224718 7694323 ~ 7694381 (+) True G681822
TU803281 other downstream 898580 8368185 ~ 8368935 (+) True G682232
TU803553 other downstream 1566812 9036417 ~ 9038892 (+) True CI01180000_09036547_09038313
TU806595 other downstream 3350381 10819986 ~ 10866176 (+) True G685188

Expression Profile