Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU799289 |
| length | 1103 |
| lncRNA type | antisense_over |
| GC content | 0.51 |
| exon number | 9 |
| gene id | G678632 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 677874 ~ 685043 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU799246 | lncRNA | upstream | 126700 | 503871 ~ 551174 (+) | True | G678595 |
| TU799261 | lncRNA | upstream | 144226 | 533150 ~ 533648 (+) | True | G678608 |
| TU799073 | lncRNA | upstream | 185243 | 445739 ~ 492631 (+) | True | G678442 |
| TU799205 | lncRNA | upstream | 190731 | 434733 ~ 487143 (+) | True | G678554 |
| TU799167 | lncRNA | upstream | 233292 | 351957 ~ 444582 (+) | True | G678521 |
| TU799362 | lncRNA | downstream | 13632 | 698675 ~ 699054 (+) | True | G678703 |
| TU799313 | lncRNA | downstream | 29391 | 714434 ~ 714846 (+) | True | G678654 |
| TU799371 | lncRNA | downstream | 37080 | 722123 ~ 722457 (+) | True | G678712 |
| TU799299 | lncRNA | downstream | 62222 | 747265 ~ 777004 (+) | True | G678640 |
| TU799290 | lncRNA | downstream | 92564 | 777607 ~ 779619 (+) | False | G678633 |
| CI01180000_00661446_00671602.mRNA | mRNA | upstream | 5686 | 661109 ~ 672188 (+) | True | CI01180000_00661446_00671602 |
| CI01180000_00427700_00437883.mRNA | mRNA | upstream | 239408 | 427650 ~ 438466 (+) | True | CI01180000_00427700_00437883 |
| CI01180000_00368639_00375465.mRNA | mRNA | upstream | 301627 | 368639 ~ 376247 (+) | True | CI01180000_00368639_00375465 |
| CI01180000_00361420_00364335.mRNA | mRNA | upstream | 312748 | 361420 ~ 365126 (+) | True | CI01180000_00361420_00364335 |
| CI01180000_00306160_00314770.mRNA | mRNA | upstream | 362130 | 306160 ~ 315744 (+) | True | CI01180000_00306160_00314770 |
| CI01180000_00737754_00743866.mRNA | mRNA | downstream | 50267 | 735310 ~ 744211 (+) | True | CI01180000_00737754_00743866 |
| CI01180000_00765917_00776252.mRNA | mRNA | downstream | 80754 | 765797 ~ 776911 (+) | True | CI01180000_00765917_00776252 |
| CI01180000_00812535_00858607.mRNA | mRNA | downstream | 126814 | 811857 ~ 859005 (+) | True | CI01180000_00812535_00858607 |
| CI01180000_00862066_00867985.mRNA | mRNA | downstream | 175703 | 860746 ~ 868112 (+) | True | CI01180000_00862066_00867985 |
| CI01180000_00947514_00949868.mRNA | mRNA | downstream | 261378 | 946421 ~ 950906 (+) | True | CI01180000_00947514_00949868 |
| TU799069 | other | upstream | 526222 | 147934 ~ 151652 (+) | True | G678440 |
| TU799410 | other | downstream | 374800 | 1059843 ~ 1066091 (+) | True | G678751 |
| TU799296 | other | downstream | 464508 | 1149551 ~ 1155672 (+) | True | G678637 |
| TU799630 | other | downstream | 833310 | 1518353 ~ 1556151 (+) | True | G678946 |
| TU799769 | other | downstream | 1110127 | 1795170 ~ 1799433 (+) | True | G679076 |
| TU800043 | other | downstream | 1703824 | 2388867 ~ 2397360 (+) | True | G679324 |
