RNA id: TU799362


Basic Information

Item Value
RNA id TU799362
length 304
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G678703
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 698675 ~ 699054 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACAGAATAGGCTCTCACGTACCGATCTCGATCACGCGATACTGTTACTACAGAGTGTTGCCCTGCCCTGGCCCACTGGATCTACATGACGAATACAGTGTTGTAGCCTAACCACCACGAAACTCAAACAATAAATGCCGTTTTGATGCTCTTTAATGTGGCGTGACAGATCACTGTACAGGCGCCTCATTTCAACCAGCAGCGCGGAGCGCGAGTGTATGTGATCATCTCTTCCTATTTAATACTAGTTACAGAATAAACAAGAATGAACATCTGAAGGTATATTGAAAGATACAGTACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799289 lncRNA upstream 13632 677874 ~ 685043 (+) True G678632
TU799246 lncRNA upstream 147501 503871 ~ 551174 (+) True G678595
TU799261 lncRNA upstream 165027 533150 ~ 533648 (+) True G678608
TU799073 lncRNA upstream 206044 445739 ~ 492631 (+) True G678442
TU799205 lncRNA upstream 211532 434733 ~ 487143 (+) True G678554
TU799313 lncRNA downstream 15380 714434 ~ 714846 (+) True G678654
TU799371 lncRNA downstream 23069 722123 ~ 722457 (+) True G678712
TU799299 lncRNA downstream 48211 747265 ~ 777004 (+) True G678640
TU799290 lncRNA downstream 78553 777607 ~ 779619 (+) False G678633
TU799292 lncRNA downstream 78553 777607 ~ 779619 (+) True G678633
CI01180000_00661446_00671602.mRNA mRNA upstream 26487 661109 ~ 672188 (+) True CI01180000_00661446_00671602
CI01180000_00427700_00437883.mRNA mRNA upstream 260209 427650 ~ 438466 (+) True CI01180000_00427700_00437883
CI01180000_00368639_00375465.mRNA mRNA upstream 322428 368639 ~ 376247 (+) True CI01180000_00368639_00375465
CI01180000_00361420_00364335.mRNA mRNA upstream 333549 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00306160_00314770.mRNA mRNA upstream 382931 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00737754_00743866.mRNA mRNA downstream 36256 735310 ~ 744211 (+) True CI01180000_00737754_00743866
CI01180000_00765917_00776252.mRNA mRNA downstream 66743 765797 ~ 776911 (+) True CI01180000_00765917_00776252
CI01180000_00812535_00858607.mRNA mRNA downstream 112803 811857 ~ 859005 (+) True CI01180000_00812535_00858607
CI01180000_00862066_00867985.mRNA mRNA downstream 161692 860746 ~ 868112 (+) True CI01180000_00862066_00867985
CI01180000_00947514_00949868.mRNA mRNA downstream 247367 946421 ~ 950906 (+) True CI01180000_00947514_00949868
TU799069 other upstream 547023 147934 ~ 151652 (+) True G678440
TU799410 other downstream 360789 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 450497 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 819299 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1096116 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 1689813 2388867 ~ 2397360 (+) True G679324

Expression Profile