RNA id: TU801301


Basic Information

Item Value
RNA id TU801301
length 238
lncRNA type read_through
GC content 0.34
exon number 2
gene id G680441
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3213013 ~ 3280015 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTGTTTGTTTTTGCGTACAAAAAGTATTCTCGTCACTTCATAACATTAAGGTTGAACCAATGTAGTCACGTTGACTATTTTAACGATGTCTTTACTACTCTTCTGGACCTTGAATGATGGTAATTACGTTGCTTTCTATAGGAGATAAAAAAAAAACTCGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAAGGAAGGTCTTACGGGTGTGGAACGACATGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801167 lncRNA upstream 33447 3123791 ~ 3179566 (+) True G680317
TU801278 lncRNA upstream 43557 3165488 ~ 3169456 (+) True G680424
TU801181 lncRNA upstream 160988 3051549 ~ 3052025 (+) True G680331
TU801199 lncRNA upstream 245256 2966958 ~ 2967757 (+) True G680349
TU801148 lncRNA upstream 308849 2903841 ~ 2904164 (+) True G680309
TU801606 lncRNA downstream 107212 3387227 ~ 3387686 (+) True G680705
TU801607 lncRNA downstream 108273 3388288 ~ 3388573 (+) True G680706
TU801684 lncRNA downstream 169070 3449085 ~ 3460969 (+) True G680767
TU801714 lncRNA downstream 222094 3502109 ~ 3502348 (+) True G680797
TU801660 lncRNA downstream 237610 3517625 ~ 3524426 (+) True G680743
CI01180000_03149731_03154047.mRNA mRNA upstream 58925 3149047 ~ 3154088 (+) True CI01180000_03149731_03154047
CI01180000_03077007_03078238.mRNA mRNA upstream 134214 3076607 ~ 3078799 (+) True CI01180000_03077007_03078238
CI01180000_02998131_03010201.mRNA mRNA upstream 202510 2998131 ~ 3010503 (+) True CI01180000_02998131_03010201
CI01180000_02951792_02968343.mRNA mRNA upstream 244670 2951792 ~ 2968343 (+) True CI01180000_02951792_02968343
CI01180000_02690045_02691641.mRNA mRNA upstream 520830 2689271 ~ 2692183 (+) False CI01180000_02690045_02691641
CI01180000_03280581_03284614.mRNA mRNA downstream 333 3280348 ~ 3284621 (+) True CI01180000_03280581_03284614
CI01180000_03286578_03289266.mRNA mRNA downstream 6048 3286063 ~ 3289303 (+) True CI01180000_03286578_03289266
CI01180000_03425920_03442839.mRNA mRNA downstream 145499 3425514 ~ 3444183 (+) True CI01180000_03425920_03442839
CI01180000_03447461_03475999.mRNA mRNA downstream 167329 3447344 ~ 3476102 (+) True CI01180000_03447461_03475999
CI01180000_03571292_03571611.mRNA mRNA downstream 289150 3569165 ~ 3572427 (+) False CI01180000_03571292_03571611
TU801022 other upstream 517577 2694407 ~ 2695436 (+) True G680192
TU801024 other upstream 518779 2693355 ~ 2694234 (+) True G680192
TU800043 other upstream 815653 2388867 ~ 2397360 (+) True G679324
TU799769 other upstream 1413580 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 1656862 1518353 ~ 1556151 (+) True G678946
TU801631 other downstream 273262 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 273547 3553562 ~ 3563250 (+) True G680723
TU801653 other downstream 485676 3765691 ~ 3784441 (+) True G680736
TU802064 other downstream 1503290 4783305 ~ 4785631 (+) True G681137
TU802202 other downstream 2090395 5370410 ~ 5373762 (+) True G681268

Expression Profile