RNA id: TU807403


Basic Information

Item Value
RNA id TU807403
length 335
lncRNA type read_through
GC content 0.42
exon number 2
gene id G685923
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 10926429 ~ 10996548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTCAGAAAATTAGAATATTGTGAAAAGGTTCAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGGGAAGACTACTGACTTGACAGTTGTCCAAAAGACAACCATTGACACCTTGCACAAGGAGGGCAAGACACAAAAGGTCATTGCAAAAGAGGCTGGCTGTTCACAGAGCTCTGTGTCCAAGCACATTAATAGAGAGGCGAAGGGAAGGAAAAGATGTGGTAGAAAAAAGTATACAAGCAATAGGGATAACCGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU807386 lncRNA downstream 36175 10889603 ~ 10890254 (-) True G685908
TU807312 lncRNA downstream 152565 10773477 ~ 10773864 (-) True G685834
TU807265 lncRNA downstream 216396 10709583 ~ 10710033 (-) True G685788
TU807220 lncRNA downstream 299645 10626300 ~ 10626784 (-) True G685746
TU807217 lncRNA downstream 306687 10619499 ~ 10619742 (-) True G685743
TU807443 lncRNA upstream 10510 11007058 ~ 11007317 (-) True G685961
TU807473 lncRNA upstream 90077 11086625 ~ 11086950 (-) True G685987
TU807438 lncRNA upstream 90505 11087769 ~ 11090853 (-) True G685956
TU807497 lncRNA upstream 125393 11121941 ~ 11122961 (-) True G686008
TU807499 lncRNA upstream 147102 11143650 ~ 11143855 (-) True G686010
CI01180000_10785561_10788308.mRNA mRNA downstream 137272 10784787 ~ 10789157 (-) True CI01180000_10785561_10788308
CI01180000_10538157_10538596.mRNA mRNA downstream 387833 10537077 ~ 10538596 (-) True CI01180000_10538157_10538596
CI01180000_10521190_10523609.mRNA mRNA downstream 402804 10520833 ~ 10523625 (-) True CI01180000_10521190_10523609
CI01180000_10449079_10461033.mRNA mRNA downstream 465396 10448988 ~ 10461033 (-) True CI01180000_10449079_10461033
CI01180000_10441696_10442635.mRNA mRNA downstream 483763 10441647 ~ 10442666 (-) True CI01180000_10441696_10442635
CI01180000_11077923_11087065.mRNA mRNA upstream 81375 11077923 ~ 11087065 (-) False CI01180000_11077923_11087065
CI01180000_11091600_11093609.mRNA mRNA upstream 94774 11091322 ~ 11093690 (-) True CI01180000_11091600_11093609
CI01180000_11098239_11100667.mRNA mRNA upstream 101188 11097736 ~ 11100667 (-) True CI01180000_11098239_11100667
CI01180000_11106711_11107109.mRNA mRNA upstream 109918 11106466 ~ 11107894 (-) True CI01180000_11106711_11107109
CI01180000_11111159_11112550.mRNA mRNA upstream 114253 11110801 ~ 11112550 (-) True CI01180000_11111159_11112550
TU806323 other downstream 1025041 9898424 ~ 9901388 (-) True G684929
TU805835 other downstream 2202562 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 3015221 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 3343626 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 3400775 7506890 ~ 7525654 (-) True G684071
TU807544 other upstream 345068 11341616 ~ 11343496 (-) True G686052

Expression Profile