RNA id: TU807312


Basic Information

Item Value
RNA id TU807312
length 363
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G685834
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 10773477 ~ 10773864 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGAATGCAACAGGACGCTTCTGAACGGTTAGTTGATGAATTTATGTAGCTGATGTGGAGTTAACTATCTTAAAGTCACTGATTAGCATATTCTGTCATGATAATCTATAAATCGCTCCTGTGGGAACTGTTGTTAGATGCTTACAGAGCCAGAGAATATATGCTGCATGAAGATAGAACAGGTATAGTTTAGTTTAATTACGGTTATAACTTGTCATTTTGTCATCTTGCTTTTATGACATGCTATTGCATTTGTGTTACATACTGTAATGCAGTAACATGGCCTCACCTCCTTTGTTGCATGTACTGGGGGGCAGGGTTTATGTAACCCAGGAAGAAGCTCGTTGTAGTCCCTACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU807265 lncRNA downstream 63444 10709583 ~ 10710033 (-) True G685788
TU807220 lncRNA downstream 146693 10626300 ~ 10626784 (-) True G685746
TU807217 lncRNA downstream 153735 10619499 ~ 10619742 (-) True G685743
TU807204 lncRNA downstream 174593 10598660 ~ 10598884 (-) True G685730
TU807202 lncRNA downstream 176109 10596993 ~ 10597368 (-) True G685728
TU807386 lncRNA upstream 115739 10889603 ~ 10890254 (-) True G685908
TU807403 lncRNA upstream 152565 10926429 ~ 10996548 (-) True G685923
TU807419 lncRNA upstream 178570 10952434 ~ 10970182 (-) True G685937
TU807435 lncRNA upstream 206384 10980248 ~ 10983846 (-) True G685953
TU807443 lncRNA upstream 233194 11007058 ~ 11007317 (-) True G685961
CI01180000_10538157_10538596.mRNA mRNA downstream 234881 10537077 ~ 10538596 (-) True CI01180000_10538157_10538596
CI01180000_10521190_10523609.mRNA mRNA downstream 249852 10520833 ~ 10523625 (-) True CI01180000_10521190_10523609
CI01180000_10449079_10461033.mRNA mRNA downstream 312444 10448988 ~ 10461033 (-) True CI01180000_10449079_10461033
CI01180000_10441696_10442635.mRNA mRNA downstream 330811 10441647 ~ 10442666 (-) True CI01180000_10441696_10442635
CI01180000_10373880_10377493.mRNA mRNA downstream 394741 10373030 ~ 10378736 (-) True CI01180000_10373880_10377493
CI01180000_10785561_10788308.mRNA mRNA upstream 10923 10784787 ~ 10789157 (-) True CI01180000_10785561_10788308
CI01180000_11077923_11087065.mRNA mRNA upstream 304059 11077923 ~ 11087065 (-) False CI01180000_11077923_11087065
CI01180000_11091600_11093609.mRNA mRNA upstream 317458 11091322 ~ 11093690 (-) True CI01180000_11091600_11093609
CI01180000_11098239_11100667.mRNA mRNA upstream 323872 11097736 ~ 11100667 (-) True CI01180000_11098239_11100667
CI01180000_11106711_11107109.mRNA mRNA upstream 332602 11106466 ~ 11107894 (-) True CI01180000_11106711_11107109
TU806323 other downstream 872089 9898424 ~ 9901388 (-) True G684929
TU805835 other downstream 2049610 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 2862269 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 3190674 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 3247823 7506890 ~ 7525654 (-) True G684071
TU807544 other upstream 567752 11341616 ~ 11343496 (-) True G686052

Expression Profile