RNA id: TCONS_00022266


Basic Information

Item Value
RNA id TCONS_00022266
length 3976
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id XLOC_011046
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46806237 ~ 46810212 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTCAAGCTATAAAATAGAAAACTCTGTTGTGAACCAGTTTCTTTCACAGGACTAAAGGAGTGTTTCGAGCCTAAACTGTGAGTAAATATAAATGTCATGTAACATGCttgctataaattaaaagcaactTATAATATTTGATAAGGCTAAAGTAAATCAAATCTAAGTTGcactctttcatttttctttaaaaagttaAGTTTGAAAATTCAATCcaaatataatgatataaatacaACTCATGAGTAAAGTTTATCGAAAAACGTTGGTGTTGGCTGAGAAAGCCTTACCTTAGTgtttaaagtagtttttaaaagcaaGAGATTTGAAACCGGTTCTTCCTGGCTCAAAACGAGGCGGTAACCTGATCCTGAAATGTTTGCTACACATTTTGCTTTGTTCTTGTAACCTTATcattaaatctaattaaatacATGAATAGCTAATCAGTTCCTGTACAGTAATATCAGATTCTATGCTAAAGACGAAATTGAGACCCAAcaataatttacagaaatgttttaCTTGAATAAACCTGAATCTAATATGTTTAAGTAAATCTGAGACAGACAAACAGTATTTAGAGCTCCCTATATTAACATATGCTCTTTGTCAGAAATGAGATCATGAATATGAACTAAAACCATTGAGACTCAGAGCTCATCTCCCAAAAACAAAAATCCAAACAGTAAATAAACTAATCTACAGTGATATGAAAACATTAGAAGTATCTATACAGGAACACAACCAACTTATATTTTAAAACGTTTCAGTAGAAAATGATTGTacaactgttgttgtttttttgtaaaatctaATTCGACAAATTGTTTTCATTACAGATTTATTCATAATGGTAAAACTGGAGTAATGCATAACATGTATTTAACTGCACATGAAGCAAAACGCTCCTCTCAAATAGTTTTGTAGTTGAGTAGCGAGTCTATTGATATGACTGAATGGCATTTCTGAGGTAggctaaatgtatattttctgacattatatacaagctgttttaacatgCGGTCGAAACACTGAATAAGGACAAAGCTTCTGATTAGGCTATGGCATGCGCTAAAGAGTAGTGATTTTTTTCTGTGAACTGTAGCAATAGACGTTATTTTAAGTTTAGCTATACCCATTCTTCTCTCTTCTCTATTAAACGTCACAGAGTgctttacatggacaccaataatttgattttaatacgattaagacttCGATTAAGAGTTTCCTACAACAATATTTCTACAAAACATTGAtggatatttgtttatttaatacatgtttgtttgtgggtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttaattgtttgtttgtttgtttgttacagaTATTTCTGGATGTGTTTGTGAGTTTTGAAGAAATTTATTAACAAAGACAATGGTGAGTTAATTAATTACAGTGTGCAGTCCTGAGTGTTTTTTTAACATCCCATTATAAATGGCAAGTACAAGAAATTTTGTTTTTAGTATCAGGTcttcactatatttattttaatgcaaatttgtactttttttactAATGACATTTTTACGCAAATATCTGCACTTATTAAATTTATCTGCCCTTATATTAAGTATAAAGACCAAAAACAAACACTCATGAATTACTTAAAATATTGATGAAATGCAATCTTTTGAAATATTTCTCATCTCAACTGTCTTACCACATCACTGTAGGGACCAAAACCTTCTAAAGTGAAAACACACGGTAGGGTAAAATGTGGTCCAACCAGGTCAGTATTTTTGTATCAGCTGGGTTATATGTGTACAGTGcgtctggaaagtattgatagggCTTCACttttccacttttttatgttacagctctattgcaaaatgaattaaattcatttattttctcaaaattctacccacaataccccataatgacaatgtgaaaaaaaagttttttaaattgttgcaaatttattaaaaataaaaaagctgaacaatcacatgtacagaagtattcacagcctttgctcaatactttgttgatgcaactttggcagcaattacagcctcaaatctttttgaatatgatgccacaagcttggcacacctgtctttggggaaTTTTTGCCAATTCCTTTCTAAATGGGAAGCAATGGTGTTCagacattttcagatctctccaaagaTGTTCGATAGGATCTAGGTCagagctctggctgggccactcaaggacattcacagagttgttgtgaagccactccattgatattttgacggtgtgctttgggtcattgtcctgctggaagatgagcTGTCACAAAAGTCTGATTTcaggagcactctgaagcaggttttcattcaggatgtctctgtacattgctgcattcatctttccctctatcctgactagtcttccagttcctgctgctgaaaaacatccccacagcatgatgctgctacccccatgctttactgtagggatgctattagcctggtgatgagcggtgcctggttttctccaaacataacgcctggcattcattccaaagagttcaattttagtctcatcagaccagagaattttgtttcatatggtctgagagtccttcagatgccttttggcaaattccagacgGGGAGCGGCTTCCATCTGGCCAGTCTATCATACAGGCATGATTGGTGGAttactgcacagatggttgtccttctgtaaggttctcctctttccacagaaaaacgctggagctcagaccgagttaccatcgggttattgatcacctccctgactaaggcccttctcccctgattactcagcttagatggccggccagctctaggaagagtcctggtggttccaaacatcttccacttatggatgatggaggccactgtgctcattggaactttcagagcagcagaaatttttctgtaaccttccccagccttgtgcctggatacaatcctgtctctgaggtctacagacaattcctttgtcttcatgcttggtttgtgctttgacatgcattgTCAAccttgggaccttatatagacaggtgtatgccttttcaaatcatgtccaatcgaCTGAATTTactacaggtgaactccaatgaagctgctgaaacatctcaagaatgaccagtggaaacagaatgtatgtgaactcaatttagagcttcacgcaaaaggctgtgaacactgatgtacatgtgatttttcaggtttttaattttaataaatttgcaacagtttcaaatctgttttcacattgtcattttggggtattGTGTGGAGAAACTttgggaaataaattaatttaatccattttggaataaggctataatgtggaaaaagtgaagcgctatgaatactttctgaatgcactgtatatttttttacttttaaattaatgCACGTAATTTTAATTCTAAGCTTTAGCATtgctcaataataataaattatgttttgctaATTTTCAGCATCATGGGTGAATATGATCTTGAACTGGAATACCCCAATAACAACCCAAATATGGTAAGACTAACTACAATGTGACCAAACAAGCTAAAAGGAACAATGATATGCTTGTTTATTTCTAGGCACAGCGCTTTGATAACCACAATGGTTTGGTCAACATGAACTGAAACATGCATGTCTCCCCCCCTCCCCCCTCCACCCCTCCCTCTTGTGTTTTCTCTTATTTTCTTGTAGGGGAACAATATGTTGGTCCCATCATACAATAATGCTGGATACTACAACCCTCAATTGAACTACAATCCGGGCAATTATGCATACGCTCAATGTCACACTGATTACCTGCGAAACTTTCAAACATATGAGACTGCAGTCGTGAGGAATGGTAGACTTGTTGAAACAGatgaatatatgtattattattattaacctaaTATTTTAGCTTTCATCAATAATTACACTACATCTTCTGAAAAATAAAGGATCTACACTGTATAAAAACG

Function

GO:

id name namespace
GO:0071103 DNA conformation change biological_process
GO:0051276 chromosome organization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021836 lncRNA downstream 7495 46796412 ~ 46798742 (-) True XLOC_011045
TCONS_00021556 lncRNA downstream 160841 46640136 ~ 46645396 (-) True XLOC_011042
TCONS_00022265 lncRNA downstream 183794 46621203 ~ 46622443 (-) True XLOC_011041
TCONS_00022264 lncRNA downstream 281136 46523564 ~ 46525101 (-) True XLOC_011034
TCONS_00021540 lncRNA downstream 284570 46519823 ~ 46521667 (-) False XLOC_011034
TCONS_00021838 lncRNA upstream 492234 47302446 ~ 47304669 (-) False XLOC_011049
TCONS_00022267 lncRNA upstream 493733 47303945 ~ 47304184 (-) True XLOC_011049
TCONS_00021569 lncRNA upstream 582051 47392263 ~ 47394651 (-) False XLOC_011051
TCONS_00021579 lncRNA upstream 1117082 47927294 ~ 47936715 (-) True XLOC_011053
TCONS_00021839 lncRNA upstream 1233172 48043384 ~ 48056492 (-) True XLOC_011055
TCONS_00021560 mRNA downstream 40084 46760625 ~ 46766153 (-) True XLOC_011044
TCONS_00021558 mRNA downstream 141772 46651655 ~ 46664465 (-) False XLOC_011043
TCONS_00021557 mRNA downstream 145496 46649469 ~ 46660741 (-) False XLOC_011043
TCONS_00021559 mRNA downstream 145557 46652296 ~ 46660680 (-) True XLOC_011043
TCONS_00021555 mRNA downstream 160841 46639772 ~ 46645396 (-) False XLOC_011042
TCONS_00021561 mRNA upstream 387900 47198112 ~ 47245563 (-) True XLOC_011047
TCONS_00021562 mRNA upstream 462613 47272825 ~ 47301376 (-) True XLOC_011048
TCONS_00021563 mRNA upstream 538554 47348766 ~ 47360023 (-) False XLOC_011050
TCONS_00021564 mRNA upstream 549542 47359754 ~ 47381519 (-) False XLOC_011050
TCONS_00021565 mRNA upstream 556922 47367134 ~ 47381652 (-) True XLOC_011050
TCONS_00021533 other downstream 465580 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 589328 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021521 other downstream 1560495 45242381 ~ 45245742 (-) True XLOC_011019
TCONS_00021515 other downstream 1613085 45186673 ~ 45193152 (-) True XLOC_011016
TCONS_00021514 other downstream 1631677 45174446 ~ 45174560 (-) True XLOC_011015
TCONS_00021580 other upstream 1132931 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021592 other upstream 3185266 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021599 other upstream 3828458 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021603 other upstream 4124978 50935190 ~ 50935306 (-) True XLOC_011077
TCONS_00021604 other upstream 4151034 50961246 ~ 50961362 (-) True XLOC_011078

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU114907 True 701 TUCP 0.48 1 CM030131.1 15866947 ~ 15867647 (-)